Analysis of interatomic Contacts of Structural Units in PDB entry:
6SEF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6SEF entry

There are 11 chains in PDB entry 6SEF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ARG 42LEU 139
B
ARG 23PHE 100
C
SER 16ILE 111
D
ARG 33SER 124
E
ARG 42LEU 139
F
ASN 25GLY 102
G
ARG 11ALA 113
H
GLU 35SER 124
I
A -72 T 72
J
A -72 T 72
V
LYS 519GLU 536
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 6SEF. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
46 57Right-handed alpha
Helix 2
AA2
A
64 76Right-handed alpha
Helix 3
AA3
A
87 116Right-handed alpha
Helix 4
AA4
A
122 134Right-handed alpha
Helix 5
AA5
A
134 139Right-handed alpha
Helix 6
AA6
B
30 41Right-handed alpha
Helix 7
AA7
B
49 76Right-handed alpha
Helix 8
AA8
B
82 94Right-handed alpha
Helix 9
AA9
C
26 37Right-handed alpha
Helix 10
AB1
C
45 72Right-handed alpha
Helix 11
AB2
C
79 90Right-handed alpha
Helix 12
AB3
C
90 97Right-handed alpha
Helix 13
AB4
D
37 49Right-handed alpha
Helix 14
AB5
D
55 84Right-handed alpha
Helix 15
AB6
D
90 102Right-handed alpha
Helix 16
AB7
D
103 122Right-handed alpha
Helix 17
AB8
E
46 57Right-handed alpha
Helix 18
AB9
E
63 79Right-handed alpha
Helix 19
AC1
E
87 117Right-handed alpha
Helix 20
AC2
E
122 134Right-handed alpha
Helix 21
AC3
F
25 29Right-handed 310
Helix 22
AC4
F
30 41Right-handed alpha
Helix 23
AC5
F
49 52Right-handed 310
Helix 24
AC6
F
53 76Right-handed alpha
Helix 25
AC7
F
82 94Right-handed alpha
Helix 26
AC8
G
16 21Right-handed alpha
Helix 27
AC9
G
26 37Right-handed alpha
Helix 28
AD1
G
46 72Right-handed alpha
Helix 29
AD2
G
79 88Right-handed alpha
Helix 30
AD3
G
90 97Right-handed alpha
Helix 31
AD4
H
38 49Right-handed alpha
Helix 32
AD5
H
55 84Right-handed alpha
Helix 33
AD6
H
90 102Right-handed alpha
Helix 34
AD7
H
103 122Right-handed alpha
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There are 9 sheets in PDB entry 6SEF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
85 86first strand
Strand 2
B
80 81parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
120 121first strand
Strand 2
B
45 46parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
42 43first strand
Strand 2
D
88 89parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
77 78first strand
Strand 2
D
53 54parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
100 102first strand
Strand 2
F
96 98parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
85 86first strand
Strand 2
F
80 81parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
120 121first strand
Strand 2
F
45 46parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
42 43first strand
Strand 2
H
88 89parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
77 78first strand
Strand 2
H
53 54parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il