Analysis of interatomic Contacts of Structural Units in PDB entry:
6SGW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6SGW entry

There are 10 chains in PDB entry 6SGW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 9	SER 89
B	PRO 8	LEU 471
C	PRO 8	VAL 472
F	SER 2	ASP 401
E	PRO 8	LEU 471
H	PRO 8	VAL 472
I	VAL 33	PHE 91
J	SER 2	SER 402
G	MET 1	LEU 285
D	MET 1	LEU 285

There are113 helices in PDB entry 6SGW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	34	49	Right-handed alpha
Helix 2	AA2	A	62	87	Right-handed alpha
Helix 3	AA3	B	34	46	Right-handed alpha
Helix 4	AA4	B	111	119	Right-handed alpha
Helix 5	AA5	B	127	158	Right-handed alpha
Helix 6	AA6	B	161	181	Right-handed alpha
Helix 7	AA7	B	187	196	Right-handed alpha
Helix 8	AA8	B	196	207	Right-handed alpha
Helix 9	AA9	B	214	234	Right-handed alpha
Helix 10	AB1	B	240	263	Right-handed alpha
Helix 11	AB2	B	269	285	Right-handed alpha
Helix 12	AB3	B	285	291	Right-handed alpha
Helix 13	AB4	B	319	349	Right-handed alpha
Helix 14	AB5	B	356	372	Right-handed alpha
Helix 15	AB6	B	379	404	Right-handed alpha
Helix 16	AB7	B	409	430	Right-handed alpha
Helix 17	AB8	B	440	455	Right-handed alpha
Helix 18	AB9	B	457	466	Right-handed alpha
Helix 19	AC1	C	34	46	Right-handed alpha
Helix 20	AC2	C	82	87	Right-handed alpha
Helix 21	AC3	C	114	118	Right-handed 310
Helix 22	AC4	C	129	158	Right-handed alpha
Helix 23	AC5	C	161	181	Right-handed alpha
Helix 24	AC6	C	187	196	Right-handed alpha
Helix 25	AC7	C	198	207	Right-handed alpha
Helix 26	AC8	C	216	233	Right-handed alpha
Helix 27	AC9	C	241	264	Right-handed alpha
Helix 28	AD1	C	269	285	Right-handed alpha
Helix 29	AD2	C	286	294	Right-handed alpha
Helix 30	AD3	C	313	319	Right-handed alpha
Helix 31	AD4	C	319	345	Right-handed alpha
Helix 32	AD5	C	345	351	Right-handed alpha
Helix 33	AD6	C	356	373	Right-handed alpha
Helix 34	AD7	C	374	376	Right-handed 310
Helix 35	AD8	C	379	388	Right-handed alpha
Helix 36	AD9	C	388	404	Right-handed alpha
Helix 37	AE1	C	409	429	Right-handed alpha
Helix 38	AE2	C	440	467	Right-handed alpha
Helix 39	AE3	F	37	41	Right-handed 310
Helix 40	AE4	F	93	130	Right-handed alpha
Helix 41	AE5	F	134	142	Right-handed 310
Helix 42	AE6	F	185	197	Right-handed alpha
Helix 43	AE7	F	222	239	Right-handed alpha
Helix 44	AE8	F	257	263	Right-handed 310
Helix 45	AE9	F	264	268	Right-handed 310
Helix 46	AF1	F	285	294	Right-handed alpha
Helix 47	AF2	F	386	398	Right-handed alpha
Helix 48	AF3	E	34	47	Right-handed alpha
Helix 49	AF4	E	83	87	Right-handed 310
Helix 50	AF5	E	111	119	Right-handed alpha
Helix 51	AF6	E	127	157	Right-handed alpha
Helix 52	AF7	E	161	181	Right-handed alpha
Helix 53	AF8	E	187	196	Right-handed alpha
Helix 54	AF9	E	198	204	Right-handed alpha
Helix 55	AG1	E	214	233	Right-handed alpha
Helix 56	AG2	E	241	263	Right-handed alpha
Helix 57	AG3	E	270	285	Right-handed alpha
Helix 58	AG4	E	285	293	Right-handed alpha
Helix 59	AG5	E	319	350	Right-handed alpha
Helix 60	AG6	E	356	372	Right-handed alpha
Helix 61	AG7	E	379	404	Right-handed alpha
Helix 62	AG8	E	409	430	Right-handed alpha
Helix 63	AG9	E	435	439	Right-handed 310
Helix 64	AH1	E	440	456	Right-handed alpha
Helix 65	AH2	E	458	466	Right-handed alpha
Helix 66	AH3	H	34	37	Right-handed 310
Helix 67	AH4	H	38	46	Right-handed alpha
Helix 68	AH5	H	115	123	Right-handed alpha
Helix 69	AH6	H	129	158	Right-handed alpha
Helix 70	AH7	H	160	179	Right-handed alpha
Helix 71	AH8	H	187	196	Right-handed alpha
Helix 72	AH9	H	198	204	Right-handed alpha
Helix 73	AI1	H	215	234	Right-handed alpha
Helix 74	AI2	H	241	262	Right-handed alpha
Helix 75	AI3	H	270	285	Right-handed alpha
Helix 76	AI4	H	287	294	Right-handed alpha
Helix 77	AI5	H	319	345	Right-handed alpha
Helix 78	AI6	H	345	350	Right-handed alpha
Helix 79	AI7	H	356	373	Right-handed alpha
Helix 80	AI8	H	374	376	Right-handed 310
Helix 81	AI9	H	379	388	Right-handed alpha
Helix 82	AJ1	H	388	403	Right-handed alpha
Helix 83	AJ2	H	408	429	Right-handed alpha
Helix 84	AJ3	H	435	439	Right-handed 310
Helix 85	AJ4	H	442	466	Right-handed alpha
Helix 86	AJ5	H	467	471	Right-handed 310
Helix 87	AJ6	I	34	55	Right-handed alpha
Helix 88	AJ7	I	62	88	Right-handed alpha
Helix 89	AJ8	J	93	130	Right-handed alpha
Helix 90	AJ9	J	183	197	Right-handed alpha
Helix 91	AK1	J	208	212	Right-handed 310
Helix 92	AK2	J	220	238	Right-handed alpha
Helix 93	AK3	J	257	264	Right-handed 310
Helix 94	AK4	J	285	293	Right-handed alpha
Helix 95	AK5	J	386	398	Right-handed alpha
Helix 96	AK6	G	2	17	Right-handed alpha
Helix 97	AK7	G	27	41	Right-handed alpha
Helix 98	AK8	G	49	63	Right-handed alpha
Helix 99	AK9	G	90	95	Right-handed alpha
Helix 100	AL1	G	96	98	Right-handed 310
Helix 101	AL2	G	131	137	Right-handed alpha
Helix 102	AL3	G	143	162	Right-handed alpha
Helix 103	AL4	G	206	212	Right-handed alpha
Helix 104	AL5	G	265	269	Right-handed alpha
Helix 105	AL6	D	2	16	Right-handed alpha
Helix 106	AL7	D	26	41	Right-handed alpha
Helix 107	AL8	D	49	62	Right-handed alpha
Helix 108	AL9	D	86	88	Right-handed 310
Helix 109	AM1	D	89	95	Right-handed alpha
Helix 110	AM2	D	96	98	Right-handed 310
Helix 111	AM3	D	131	137	Right-handed alpha
Helix 112	AM4	D	143	163	Right-handed alpha
Helix 113	AM5	D	265	269	Right-handed alpha

There are 15 sheets in PDB entry 6SGW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	71	first strand
Strand 2	B	93	98	anti-parallel
Strand 3	B	9	16	parallel
Strand 4	B	22	30	anti-parallel
Strand 5	C	110	112	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	25	30	first strand
Strand 2	C	9	15	anti-parallel
Strand 3	C	93	98	parallel
Strand 4	C	67	71	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	23	24	first strand
Strand 2	F	172	173	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	157	158	first strand
Strand 2	F	207	208	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	202	204	first strand
Strand 2	F	161	164	anti-parallel
Strand 3	F	381	382	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	244	249	first strand
Strand 2	F	313	318	parallel
Strand 3	F	337	343	parallel
Strand 4	F	214	219	parallel
Strand 5	F	359	362	parallel
Strand 6	F	367	369	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	67	71	first strand
Strand 2	E	93	98	anti-parallel
Strand 3	E	9	16	parallel
Strand 4	E	23	30	anti-parallel
Strand 5	H	110	111	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	25	30	first strand
Strand 2	H	9	15	anti-parallel
Strand 3	H	93	98	parallel
Strand 4	H	67	71	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	4	5	first strand
Strand 2	J	400	401	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	23	24	first strand
Strand 2	J	172	173	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	158	164	first strand
Strand 2	J	202	207	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	339	343	first strand
Strand 2	J	214	218	parallel
Strand 3	J	359	362	parallel
Strand 4	J	367	369	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	246	249	first strand
Strand 2	J	315	318	parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	167	168	first strand
Strand 2	G	76	82	anti-parallel
Strand 3	G	119	126	anti-parallel
Strand 4	G	106	112	anti-parallel
Strand 5	G	220	227	anti-parallel
Strand 6	G	234	241	anti-parallel
Strand 7	G	195	198	anti-parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	166	168	first strand
Strand 2	D	75	82	anti-parallel
Strand 3	D	119	127	anti-parallel
Strand 4	D	106	112	anti-parallel
Strand 5	D	220	227	anti-parallel
Strand 6	D	234	241	anti-parallel
Strand 7	D	196	199	anti-parallel
Strand 8	D	256	258	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6SGW

Analysis of interatomic Contacts of Structural Units in PDB entry:
6SGW