Analysis of interatomic Contacts of Structural Units in PDB entry:
6SJ7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6SJ7 entry

There are 4 chains in PDB entry 6SJ7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 34	LEU 600
B	MET 1	HIS 1140
C	MET 250	GLU 328
D	LEU 5	ASN 67

There are 15 helices in PDB entry 6SJ7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	36	47	Right-handed alpha
Helix 2	AA2	A	450	461	Right-handed alpha
Helix 3	AA3	A	545	562	Right-handed alpha
Helix 4	AA4	B	252	256	Right-handed 310
Helix 5	AA5	B	756	760	Right-handed 310
Helix 6	AA6	B	986	990	Right-handed alpha
Helix 7	AA7	B	1045	1059	Right-handed alpha
Helix 8	AA8	B	1069	1074	Right-handed alpha
Helix 9	AA9	B	1091	1096	Right-handed alpha
Helix 10	AB1	B	1101	1109	Right-handed alpha
Helix 11	AB2	B	1126	1137	Right-handed alpha
Helix 12	AB3	C	262	271	Right-handed alpha
Helix 13	AB4	C	272	274	Right-handed 310
Helix 14	AB5	C	302	311	Right-handed alpha
Helix 15	AB6	D	53	64	Right-handed alpha

There are 29 sheets in PDB entry 6SJ7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	63	first strand
Strand 2	A	596	598	parallel
Strand 3	A	589	591	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	83	first strand
Strand 2	A	89	94	anti-parallel
Strand 3	A	108	113	anti-parallel
Strand 4	A	121	127	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	421	423	first strand
Strand 2	A	217	224	anti-parallel
Strand 3	A	178	186	anti-parallel
Strand 4	A	151	157	anti-parallel
Strand 5	A	139	144	anti-parallel
Strand 6	A	574	575	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	242	246	first strand
Strand 2	A	250	258	anti-parallel
Strand 3	A	441	449	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	470	471	first strand
Strand 2	A	495	497	anti-parallel
Strand 3	A	512	514	anti-parallel
Strand 4	A	538	539	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	475	482	first strand
Strand 2	A	487	493	anti-parallel
Strand 3	A	517	522	anti-parallel
Strand 4	A	529	533	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1004	1009	first strand
Strand 2	B	1028	1032	anti-parallel
Strand 3	B	1037	1042	anti-parallel
Strand 4	B	4	10	anti-parallel
Strand 5	B	1088	1090	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	21	first strand
Strand 2	B	30	35	anti-parallel
Strand 3	B	38	44	anti-parallel
Strand 4	B	49	51	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	21	first strand
Strand 2	B	30	35	anti-parallel
Strand 3	B	38	44	anti-parallel
Strand 4	B	55	56	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	67	first strand
Strand 2	B	76	81	anti-parallel
Strand 3	B	85	90	anti-parallel
Strand 4	B	101	107	anti-parallel
Strand 5	D	45	49	parallel
Strand 6	B	151	157	parallel
Strand 7	B	140	144	anti-parallel
Strand 8	B	130	134	anti-parallel
Strand 9	B	121	124	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	94	first strand
Strand 2	B	97	98	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	169	first strand
Strand 2	B	177	182	anti-parallel
Strand 3	B	189	196	anti-parallel
Strand 4	B	201	204	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	169	first strand
Strand 2	B	177	182	anti-parallel
Strand 3	B	189	196	anti-parallel
Strand 4	B	210	211	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	218	221	first strand
Strand 2	B	229	232	anti-parallel
Strand 3	B	237	241	anti-parallel
Strand 4	B	244	246	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	258	263	first strand
Strand 2	B	270	275	anti-parallel
Strand 3	B	279	284	anti-parallel
Strand 4	B	301	307	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	287	288	first strand
Strand 2	B	296	297	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	311	313	first strand
Strand 2	B	321	326	anti-parallel
Strand 3	B	316	317	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	311	313	first strand
Strand 2	B	321	326	anti-parallel
Strand 3	B	331	336	anti-parallel
Strand 4	B	347	353	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	362	365	first strand
Strand 2	B	374	379	anti-parallel
Strand 3	B	386	391	anti-parallel
Strand 4	B	711	716	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	720	727	first strand
Strand 2	B	732	743	anti-parallel
Strand 3	B	749	751	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	720	727	first strand
Strand 2	B	732	743	anti-parallel
Strand 3	B	786	795	anti-parallel
Strand 4	B	801	806	anti-parallel
Strand 5	B	762	765	parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	811	819	first strand
Strand 2	B	828	835	anti-parallel
Strand 3	B	845	853	anti-parallel
Strand 4	B	858	866	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	872	875	first strand
Strand 2	B	880	883	anti-parallel
Strand 3	B	888	893	anti-parallel
Strand 4	B	899	905	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	911	917	first strand
Strand 2	B	920	925	anti-parallel
Strand 3	B	931	934	anti-parallel
Strand 4	B	943	947	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	954	959	first strand
Strand 2	B	965	969	anti-parallel
Strand 3	B	973	979	anti-parallel
Strand 4	B	992	998	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1076	1077	first strand
Strand 2	B	1082	1083	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	251	253	first strand
Strand 2	C	295	298	anti-parallel
Strand 3	C	276	280	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	283	284	first strand
Strand 2	C	289	290	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	314	316	first strand
Strand 2	C	319	321	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6SJ7

Analysis of interatomic Contacts of Structural Units in PDB entry:
6SJ7