Analysis of interatomic Contacts of Structural Units in PDB entry:
6SZV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6SZV entry

There are 6 chains in PDB entry 6SZV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1GLY 714
B
MET 1GLN 756
C
SER -1GLY 248
V
A 1 G 14
R
U 14 U 31
M
A 18 G 26
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 74 helices in PDB entry 6SZV. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
2 9Right-handed alpha
Helix 2
AA2
A
10 25Right-handed alpha
Helix 3
AA3
A
32 50Right-handed alpha
Helix 4
AA4
A
83 98Right-handed alpha
Helix 5
AA5
A
126 138Right-handed alpha
Helix 6
AA6
A
156 160Right-handed 310
Helix 7
AA7
A
164 185Right-handed alpha
Helix 8
AA8
A
188 194Right-handed alpha
Helix 9
AA9
A
208 216Right-handed alpha
Helix 10
AB1
A
225 235Right-handed alpha
Helix 11
AB2
A
240 249Right-handed alpha
Helix 12
AB3
A
302 312Right-handed alpha
Helix 13
AB4
A
330 347Right-handed alpha
Helix 14
AB5
A
358 365Right-handed alpha
Helix 15
AB6
A
375 379Right-handed 310
Helix 16
AB7
A
400 410Right-handed alpha
Helix 17
AB8
A
428 446Right-handed alpha
Helix 18
AB9
A
448 471Right-handed alpha
Helix 19
AC1
A
524 533Right-handed 310
Helix 20
AC2
A
566 575Right-handed alpha
Helix 21
AC3
A
577 599Right-handed alpha
Helix 22
AC4
A
602 608Right-handed alpha
Helix 23
AC5
A
627 645Right-handed alpha
Helix 24
AC6
A
647 669Right-handed alpha
Helix 25
AC7
A
677 687Right-handed alpha
Helix 26
AC8
A
692 713Right-handed alpha
Helix 27
AC9
B
5 11Right-handed 310
Helix 28
AD1
B
14 22Right-handed 310
Helix 29
AD2
B
35 49Right-handed alpha
Helix 30
AD3
B
84 99Right-handed alpha
Helix 31
AD4
B
101 115Right-handed alpha
Helix 32
AD5
B
118 125Right-handed 310
Helix 33
AD6
B
139 154Right-handed alpha
Helix 34
AD7
B
156 161Right-handed 310
Helix 35
AD8
B
162 173Right-handed alpha
Helix 36
AD9
B
174 176Right-handed 310
Helix 37
AE1
B
213 222Right-handed alpha
Helix 38
AE2
B
245 264Right-handed alpha
Helix 39
AE3
B
275 292Right-handed alpha
Helix 40
AE4
B
308 313Right-handed alpha
Helix 41
AE5
B
314 326Right-handed alpha
Helix 42
AE6
B
330 346Right-handed alpha
Helix 43
AE7
B
369 376Right-handed 310
Helix 44
AE8
B
377 381Right-handed 310
Helix 45
AE9
B
382 393Right-handed alpha
Helix 46
AF1
B
412 427Right-handed alpha
Helix 47
AF2
B
428 433Right-handed alpha
Helix 48
AF3
B
455 473Right-handed alpha
Helix 49
AF4
B
505 512Right-handed 310
Helix 50
AF5
B
518 537Right-handed alpha
Helix 51
AF6
B
540 559Right-handed alpha
Helix 52
AF7
B
572 582Right-handed alpha
Helix 53
AF8
B
585 589Right-handed 310
Helix 54
AF9
B
590 594Right-handed 310
Helix 55
AG1
B
607 612Right-handed alpha
Helix 56
AG2
B
613 616Right-handed 310
Helix 57
AG3
B
617 625Right-handed alpha
Helix 58
AG4
B
683 698Right-handed alpha
Helix 59
AG5
B
713 731Right-handed alpha
Helix 60
AG6
B
736 754Right-handed alpha
Helix 61
AG7
C
0 12Right-handed alpha
Helix 62
AG8
C
13 23Right-handed alpha
Helix 63
AG9
C
27 33Right-handed alpha
Helix 64
AH1
C
42 51Right-handed alpha
Helix 65
AH2
C
62 67Right-handed alpha
Helix 66
AH3
C
92 103Right-handed alpha
Helix 67
AH4
C
110 115Right-handed alpha
Helix 68
AH5
C
115 127Right-handed alpha
Helix 69
AH6
C
155 168Right-handed alpha
Helix 70
AH7
C
169 172Right-handed 310
Helix 71
AH8
C
179 193Right-handed alpha
Helix 72
AH9
C
199 212Right-handed alpha
Helix 73
AI1
C
225 230Right-handed alpha
Helix 74
AI2
C
231 236Right-handed alpha
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There are 14 sheets in PDB entry 6SZV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
60 62first strand
Strand 2
A
52 54anti-parallel
Strand 3
A
73 74anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
76 78first strand
Strand 2
A
109 111anti-parallel
Strand 3
A
116 123anti-parallel
Strand 4
A
144 149parallel
Strand 5
A
154 155anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
258 259first strand
Strand 2
A
674 675anti-parallel
Strand 3
B
483 486anti-parallel
Strand 4
B
298 304anti-parallel
Strand 5
B
446 453anti-parallel
Strand 6
B
436 443anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
290 293first strand
Strand 2
A
491 501anti-parallel
Strand 3
A
513 521anti-parallel
Strand 4
A
551 565anti-parallel
Strand 5
A
536 546anti-parallel
Strand 6
A
317 324anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
290 293first strand
Strand 2
A
491 501anti-parallel
Strand 3
A
475 485anti-parallel
Strand 4
A
354 355anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
372 373first strand
Strand 2
B
364 368parallel
Strand 3
B
355 359anti-parallel
Strand 4
A
386 387anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
622 626first strand
Strand 2
A
614 619anti-parallel
Strand 3
B
2 3anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
54 57first strand
Strand 2
B
64 67anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
127 130first strand
Strand 2
B
135 138anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
179 193first strand
Strand 2
B
198 212anti-parallel
Strand 3
B
677 678parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
240 243first strand
Strand 2
B
223 228anti-parallel
Strand 3
B
348 350parallel
Strand 4
B
400 402anti-parallel
Strand 5
B
396 397anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
57 60first strand
Strand 2
C
88 91anti-parallel
Strand 3
C
78 80anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
129 135first strand
Strand 2
C
240 245anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
141 148first strand
Strand 2
C
214 220anti-parallel
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