Analysis of interatomic Contacts of Structural Units in PDB entry:
6T0U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6T0U entry

There are 4 chains in PDB entry 6T0U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLY 714
B	MET 1	GLY 757
C	GLY -2	GLY 248
V	A 1	U 44

There are 70 helices in PDB entry 6T0U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	9	Right-handed alpha
Helix 2	AA2	A	10	25	Right-handed alpha
Helix 3	AA3	A	32	50	Right-handed alpha
Helix 4	AA4	A	83	99	Right-handed alpha
Helix 5	AA5	A	126	138	Right-handed alpha
Helix 6	AA6	A	158	160	Right-handed 310
Helix 7	AA7	A	164	183	Right-handed alpha
Helix 8	AA8	A	187	193	Right-handed alpha
Helix 9	AA9	A	208	217	Right-handed alpha
Helix 10	AB1	A	225	235	Right-handed alpha
Helix 11	AB2	A	240	249	Right-handed alpha
Helix 12	AB3	A	302	312	Right-handed alpha
Helix 13	AB4	A	330	346	Right-handed alpha
Helix 14	AB5	A	358	366	Right-handed alpha
Helix 15	AB6	A	375	379	Right-handed 310
Helix 16	AB7	A	400	410	Right-handed alpha
Helix 17	AB8	A	428	446	Right-handed alpha
Helix 18	AB9	A	448	471	Right-handed alpha
Helix 19	AC1	A	528	533	Right-handed 310
Helix 20	AC2	A	566	575	Right-handed alpha
Helix 21	AC3	A	576	599	Right-handed alpha
Helix 22	AC4	A	602	609	Right-handed alpha
Helix 23	AC5	A	627	645	Right-handed alpha
Helix 24	AC6	A	647	669	Right-handed alpha
Helix 25	AC7	A	677	689	Right-handed alpha
Helix 26	AC8	A	692	712	Right-handed alpha
Helix 27	AC9	B	5	11	Right-handed 310
Helix 28	AD1	B	14	22	Right-handed 310
Helix 29	AD2	B	35	49	Right-handed alpha
Helix 30	AD3	B	84	99	Right-handed alpha
Helix 31	AD4	B	101	115	Right-handed alpha
Helix 32	AD5	B	118	124	Right-handed 310
Helix 33	AD6	B	138	153	Right-handed alpha
Helix 34	AD7	B	156	161	Right-handed 310
Helix 35	AD8	B	162	173	Right-handed alpha
Helix 36	AD9	B	174	176	Right-handed 310
Helix 37	AE1	B	213	222	Right-handed alpha
Helix 38	AE2	B	248	264	Right-handed alpha
Helix 39	AE3	B	274	289	Right-handed alpha
Helix 40	AE4	B	314	326	Right-handed alpha
Helix 41	AE5	B	330	346	Right-handed alpha
Helix 42	AE6	B	371	376	Right-handed 310
Helix 43	AE7	B	377	381	Right-handed 310
Helix 44	AE8	B	382	393	Right-handed alpha
Helix 45	AE9	B	414	427	Right-handed alpha
Helix 46	AF1	B	428	433	Right-handed alpha
Helix 47	AF2	B	455	473	Right-handed alpha
Helix 48	AF3	B	518	536	Right-handed alpha
Helix 49	AF4	B	540	559	Right-handed alpha
Helix 50	AF5	B	572	582	Right-handed alpha
Helix 51	AF6	B	585	589	Right-handed 310
Helix 52	AF7	B	590	594	Right-handed 310
Helix 53	AF8	B	607	612	Right-handed alpha
Helix 54	AF9	B	613	616	Right-handed 310
Helix 55	AG1	B	617	625	Right-handed alpha
Helix 56	AG2	B	683	700	Right-handed alpha
Helix 57	AG3	B	713	732	Right-handed alpha
Helix 58	AG4	B	736	756	Right-handed alpha
Helix 59	AG5	C	0	13	Right-handed alpha
Helix 60	AG6	C	13	23	Right-handed alpha
Helix 61	AG7	C	26	34	Right-handed 310
Helix 62	AG8	C	42	52	Right-handed alpha
Helix 63	AG9	C	62	67	Right-handed alpha
Helix 64	AH1	C	92	103	Right-handed alpha
Helix 65	AH2	C	110	115	Right-handed alpha
Helix 66	AH3	C	115	127	Right-handed alpha
Helix 67	AH4	C	155	168	Right-handed alpha
Helix 68	AH5	C	179	193	Right-handed alpha
Helix 69	AH6	C	199	212	Right-handed alpha
Helix 70	AH7	C	225	230	Right-handed alpha

There are 17 sheets in PDB entry 6T0U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	61	first strand
Strand 2	A	53	54	anti-parallel
Strand 3	A	73	74	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	78	first strand
Strand 2	A	109	111	anti-parallel
Strand 3	A	116	123	anti-parallel
Strand 4	A	143	149	parallel
Strand 5	A	154	156	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	258	259	first strand
Strand 2	A	674	675	anti-parallel
Strand 3	B	483	486	anti-parallel
Strand 4	B	298	305	anti-parallel
Strand 5	B	446	453	anti-parallel
Strand 6	B	436	439	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	274	275	first strand
Strand 2	A	396	397	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	293	first strand
Strand 2	A	491	501	anti-parallel
Strand 3	A	513	521	anti-parallel
Strand 4	A	551	565	anti-parallel
Strand 5	A	536	546	anti-parallel
Strand 6	A	317	324	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	293	first strand
Strand 2	A	491	501	anti-parallel
Strand 3	A	477	485	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	372	373	first strand
Strand 2	B	364	368	parallel
Strand 3	B	355	359	anti-parallel
Strand 4	A	386	387	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	622	626	first strand
Strand 2	A	614	619	anti-parallel
Strand 3	B	2	3	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	57	first strand
Strand 2	B	64	67	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	130	first strand
Strand 2	B	135	137	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	180	183	first strand
Strand 2	B	208	211	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	186	193	first strand
Strand 2	B	198	205	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	240	243	first strand
Strand 2	B	223	228	anti-parallel
Strand 3	B	348	350	parallel
Strand 4	B	400	402	anti-parallel
Strand 5	B	396	397	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	489	492	first strand
Strand 2	B	495	498	anti-parallel
Strand 3	B	501	504	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	59	first strand
Strand 2	C	89	91	anti-parallel
Strand 3	C	78	79	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	135	first strand
Strand 2	C	240	245	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	148	first strand
Strand 2	C	214	220	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6T0U

Analysis of interatomic Contacts of Structural Units in PDB entry:
6T0U