Analysis of interatomic Contacts of Structural Units in PDB entry:
6T0V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6T0V entry

There are 6 chains in PDB entry 6T0V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLY 714
B	MET 1	GLY 757
C	SER -1	LYS 738
V	A 1	G 14
R	U 14	U 31
M	A 2	G 26

There are 82 helices in PDB entry 6T0V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	8	Right-handed alpha
Helix 2	AA2	A	10	23	Right-handed alpha
Helix 3	AA3	A	31	50	Right-handed alpha
Helix 4	AA4	A	83	96	Right-handed alpha
Helix 5	AA5	A	126	138	Right-handed alpha
Helix 6	AA6	A	164	183	Right-handed alpha
Helix 7	AA7	A	187	194	Right-handed alpha
Helix 8	AA8	A	208	217	Right-handed alpha
Helix 9	AA9	A	225	235	Right-handed alpha
Helix 10	AB1	A	240	249	Right-handed alpha
Helix 11	AB2	A	302	312	Right-handed alpha
Helix 12	AB3	A	330	347	Right-handed alpha
Helix 13	AB4	A	358	365	Right-handed alpha
Helix 14	AB5	A	377	379	Right-handed 310
Helix 15	AB6	A	400	410	Right-handed alpha
Helix 16	AB7	A	428	446	Right-handed alpha
Helix 17	AB8	A	448	471	Right-handed alpha
Helix 18	AB9	A	524	533	Right-handed 310
Helix 19	AC1	A	566	575	Right-handed alpha
Helix 20	AC2	A	577	599	Right-handed alpha
Helix 21	AC3	A	602	609	Right-handed alpha
Helix 22	AC4	A	627	645	Right-handed alpha
Helix 23	AC5	A	647	669	Right-handed alpha
Helix 24	AC6	A	677	687	Right-handed alpha
Helix 25	AC7	A	692	713	Right-handed alpha
Helix 26	AC8	B	5	11	Right-handed 310
Helix 27	AC9	B	17	22	Right-handed 310
Helix 28	AD1	B	35	50	Right-handed alpha
Helix 29	AD2	B	84	99	Right-handed alpha
Helix 30	AD3	B	101	117	Right-handed alpha
Helix 31	AD4	B	118	124	Right-handed 310
Helix 32	AD5	B	138	153	Right-handed alpha
Helix 33	AD6	B	156	161	Right-handed 310
Helix 34	AD7	B	162	174	Right-handed alpha
Helix 35	AD8	B	213	222	Right-handed alpha
Helix 36	AD9	B	245	265	Right-handed alpha
Helix 37	AE1	B	275	293	Right-handed alpha
Helix 38	AE2	B	314	326	Right-handed alpha
Helix 39	AE3	B	330	346	Right-handed alpha
Helix 40	AE4	B	382	393	Right-handed alpha
Helix 41	AE5	B	412	427	Right-handed alpha
Helix 42	AE6	B	428	433	Right-handed alpha
Helix 43	AE7	B	455	473	Right-handed alpha
Helix 44	AE8	B	505	512	Right-handed 310
Helix 45	AE9	B	518	536	Right-handed alpha
Helix 46	AF1	B	540	560	Right-handed alpha
Helix 47	AF2	B	572	582	Right-handed alpha
Helix 48	AF3	B	585	589	Right-handed 310
Helix 49	AF4	B	590	594	Right-handed 310
Helix 50	AF5	B	607	612	Right-handed alpha
Helix 51	AF6	B	617	625	Right-handed alpha
Helix 52	AF7	B	683	698	Right-handed alpha
Helix 53	AF8	B	700	704	Right-handed 310
Helix 54	AF9	B	713	731	Right-handed alpha
Helix 55	AG1	B	736	754	Right-handed alpha
Helix 56	AG2	C	1	12	Right-handed alpha
Helix 57	AG3	C	13	23	Right-handed alpha
Helix 58	AG4	C	26	30	Right-handed 310
Helix 59	AG5	C	42	51	Right-handed alpha
Helix 60	AG6	C	62	67	Right-handed alpha
Helix 61	AG7	C	92	103	Right-handed alpha
Helix 62	AG8	C	110	115	Right-handed alpha
Helix 63	AG9	C	115	127	Right-handed alpha
Helix 64	AH1	C	155	167	Right-handed alpha
Helix 65	AH2	C	179	193	Right-handed alpha
Helix 66	AH3	C	199	212	Right-handed alpha
Helix 67	AH4	C	225	230	Right-handed alpha
Helix 68	AH5	C	231	236	Right-handed alpha
Helix 69	AH6	C	251	273	Right-handed alpha
Helix 70	AH7	C	275	286	Right-handed alpha
Helix 71	AH8	C	294	298	Right-handed alpha
Helix 72	AH9	C	307	316	Right-handed alpha
Helix 73	AI1	C	390	405	Right-handed alpha
Helix 74	AI2	C	429	441	Right-handed alpha
Helix 75	AI3	C	442	450	Right-handed alpha
Helix 76	AI4	C	514	518	Right-handed 310
Helix 77	AI5	C	541	556	Right-handed alpha
Helix 78	AI6	C	556	566	Right-handed alpha
Helix 79	AI7	C	574	578	Right-handed 310
Helix 80	AI8	C	587	606	Right-handed alpha
Helix 81	AI9	C	611	619	Right-handed alpha
Helix 82	AJ1	C	620	622	Right-handed 310

There are 23 sheets in PDB entry 6T0V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	61	first strand
Strand 2	A	53	54	anti-parallel
Strand 3	A	73	74	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	77	first strand
Strand 2	A	109	111	anti-parallel
Strand 3	A	116	123	anti-parallel
Strand 4	A	143	149	parallel
Strand 5	A	154	155	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	258	259	first strand
Strand 2	A	674	675	anti-parallel
Strand 3	B	483	486	anti-parallel
Strand 4	B	298	304	anti-parallel
Strand 5	B	447	453	anti-parallel
Strand 6	B	436	442	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	293	first strand
Strand 2	A	491	501	anti-parallel
Strand 3	A	475	486	anti-parallel
Strand 4	A	354	355	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	321	324	first strand
Strand 2	A	536	546	anti-parallel
Strand 3	A	551	565	anti-parallel
Strand 4	A	513	521	anti-parallel
Strand 5	A	491	501	anti-parallel
Strand 6	A	475	486	anti-parallel
Strand 7	A	415	416	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	372	375	first strand
Strand 2	B	364	368	parallel
Strand 3	B	355	359	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	623	626	first strand
Strand 2	A	614	618	anti-parallel
Strand 3	B	2	3	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	57	first strand
Strand 2	B	64	67	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	130	first strand
Strand 2	B	135	137	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	180	192	first strand
Strand 2	B	199	211	anti-parallel
Strand 3	B	677	678	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	240	243	first strand
Strand 2	B	223	228	anti-parallel
Strand 3	B	348	350	parallel
Strand 4	B	400	402	anti-parallel
Strand 5	B	396	397	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	489	491	first strand
Strand 2	B	496	498	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	667	668	first strand
Strand 2	C	57	60	anti-parallel
Strand 3	C	88	91	anti-parallel
Strand 4	C	78	80	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	135	first strand
Strand 2	C	240	245	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	148	first strand
Strand 2	C	214	220	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	292	293	first strand
Strand 2	C	287	289	anti-parallel
Strand 3	C	529	531	anti-parallel

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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	324	325	first strand
Strand 2	C	328	334	anti-parallel
Strand 3	C	361	366	anti-parallel
Strand 4	C	370	377	anti-parallel
Strand 5	C	380	388	anti-parallel
Strand 6	C	478	480	parallel
Strand 7	C	461	463	anti-parallel
Strand 8	C	469	470	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	338	345	first strand
Strand 2	C	351	358	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	452	453	first strand
Strand 2	C	473	474	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	496	497	first strand
Strand 2	C	504	506	anti-parallel
Strand 3	C	511	513	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	635	640	first strand
Strand 2	C	643	648	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	656	659	first strand
Strand 2	C	664	667	anti-parallel
Strand 3	C	670	673	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	694	699	first strand
Strand 2	C	732	736	anti-parallel
Strand 3	C	722	724	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6T0V

Analysis of interatomic Contacts of Structural Units in PDB entry:
6T0V