Analysis of interatomic Contacts of Structural Units in PDB entry:
6T2C

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6T2C entry

There are 4 chains in PDB entry 6T2C (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 202	GLY 714
B	MET 1	ARG 672
C	ASN 42	GLY 248
V	A 1	U 34

There are 50 helices in PDB entry 6T2C. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	208	216	Right-handed alpha
Helix 2	AA2	A	225	235	Right-handed alpha
Helix 3	AA3	A	240	249	Right-handed alpha
Helix 4	AA4	A	302	312	Right-handed alpha
Helix 5	AA5	A	330	347	Right-handed alpha
Helix 6	AA6	A	358	366	Right-handed alpha
Helix 7	AA7	A	401	409	Right-handed alpha
Helix 8	AA8	A	428	446	Right-handed alpha
Helix 9	AA9	A	448	471	Right-handed alpha
Helix 10	AB1	A	524	528	Right-handed 310
Helix 11	AB2	A	566	575	Right-handed alpha
Helix 12	AB3	A	577	596	Right-handed alpha
Helix 13	AB4	A	603	608	Right-handed alpha
Helix 14	AB5	A	627	645	Right-handed alpha
Helix 15	AB6	A	647	669	Right-handed alpha
Helix 16	AB7	A	677	687	Right-handed alpha
Helix 17	AB8	A	692	713	Right-handed alpha
Helix 18	AB9	B	5	11	Right-handed 310
Helix 19	AC1	B	17	22	Right-handed 310
Helix 20	AC2	B	35	47	Right-handed alpha
Helix 21	AC3	B	84	99	Right-handed alpha
Helix 22	AC4	B	101	115	Right-handed alpha
Helix 23	AC5	B	118	123	Right-handed 310
Helix 24	AC6	B	138	153	Right-handed alpha
Helix 25	AC7	B	156	161	Right-handed 310
Helix 26	AC8	B	163	173	Right-handed alpha
Helix 27	AC9	B	213	222	Right-handed alpha
Helix 28	AD1	B	248	264	Right-handed alpha
Helix 29	AD2	B	275	290	Right-handed alpha
Helix 30	AD3	B	314	326	Right-handed alpha
Helix 31	AD4	B	330	345	Right-handed alpha
Helix 32	AD5	B	369	376	Right-handed 310
Helix 33	AD6	B	377	381	Right-handed 310
Helix 34	AD7	B	382	393	Right-handed alpha
Helix 35	AD8	B	414	425	Right-handed alpha
Helix 36	AD9	B	428	433	Right-handed alpha
Helix 37	AE1	B	455	471	Right-handed alpha
Helix 38	AE2	B	518	536	Right-handed alpha
Helix 39	AE3	B	540	559	Right-handed alpha
Helix 40	AE4	B	572	583	Right-handed alpha
Helix 41	AE5	B	585	589	Right-handed 310
Helix 42	AE6	B	590	594	Right-handed 310
Helix 43	AE7	B	600	604	Right-handed 310
Helix 44	AE8	B	607	612	Right-handed alpha
Helix 45	AE9	B	617	625	Right-handed alpha
Helix 46	AF1	C	43	53	Right-handed alpha
Helix 47	AF2	C	62	66	Right-handed 310
Helix 48	AF3	C	92	103	Right-handed alpha
Helix 49	AF4	C	110	115	Right-handed alpha
Helix 50	AF5	C	115	127	Right-handed alpha

There are 13 sheets in PDB entry 6T2C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	258	259	first strand
Strand 2	A	674	675	anti-parallel
Strand 3	B	483	486	anti-parallel
Strand 4	B	298	305	anti-parallel
Strand 5	B	446	453	anti-parallel
Strand 6	B	436	443	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	274	275	first strand
Strand 2	A	396	397	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	293	first strand
Strand 2	A	491	501	anti-parallel
Strand 3	A	513	521	anti-parallel
Strand 4	A	551	565	anti-parallel
Strand 5	A	536	546	anti-parallel
Strand 6	A	317	324	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	293	first strand
Strand 2	A	491	501	anti-parallel
Strand 3	A	475	485	anti-parallel
Strand 4	A	354	355	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	372	373	first strand
Strand 2	B	364	368	parallel
Strand 3	B	355	359	anti-parallel
Strand 4	A	386	387	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	622	626	first strand
Strand 2	A	614	619	anti-parallel
Strand 3	B	2	3	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	57	first strand
Strand 2	B	64	66	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	130	first strand
Strand 2	B	135	137	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	179	183	first strand
Strand 2	B	208	212	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	240	243	first strand
Strand 2	B	223	228	anti-parallel
Strand 3	B	348	350	parallel
Strand 4	B	400	402	anti-parallel
Strand 5	B	396	397	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	489	492	first strand
Strand 2	B	495	498	anti-parallel
Strand 3	B	501	504	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	58	first strand
Strand 2	C	90	91	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	130	first strand
Strand 2	C	244	247	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6T2C

Analysis of interatomic Contacts of Structural Units in PDB entry:
6T2C