Analysis of interatomic Contacts of Structural Units in PDB entry:
6T8H

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6T8H entry

There are 7 chains in PDB entry 6T8H (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	PRO 2	VAL 247
A	ASN 196	CYS 619
B	PRO 4	ARG 1216
C	PRO 2	VAL 247
D	PRO 2	VAL 247
P	C 1	G 17
T	C 9	G 25

There are 77 helices in PDB entry 6T8H. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	9	22	Right-handed alpha
Helix 2	AA2	E	56	58	Right-handed 310
Helix 3	AA3	E	73	82	Right-handed alpha
Helix 4	AA4	E	138	152	Right-handed alpha
Helix 5	AA5	E	201	209	Right-handed alpha
Helix 6	AA6	A	219	244	Right-handed alpha
Helix 7	AA7	A	304	310	Right-handed alpha
Helix 8	AA8	A	369	381	Right-handed alpha
Helix 9	AA9	A	386	395	Right-handed alpha
Helix 10	AB1	A	414	418	Right-handed 310
Helix 11	AB2	A	423	436	Right-handed alpha
Helix 12	AB3	A	464	473	Right-handed alpha
Helix 13	AB4	A	500	508	Right-handed alpha
Helix 14	AB5	A	516	527	Right-handed alpha
Helix 15	AB6	A	584	590	Right-handed alpha
Helix 16	AB7	A	616	619	Right-handed 310
Helix 17	AB8	B	5	31	Right-handed alpha
Helix 18	AB9	B	46	55	Right-handed alpha
Helix 19	AC1	B	59	72	Right-handed alpha
Helix 20	AC2	B	72	86	Right-handed alpha
Helix 21	AC3	B	94	112	Right-handed alpha
Helix 22	AC4	B	116	121	Right-handed alpha
Helix 23	AC5	B	144	149	Right-handed 310
Helix 24	AC6	B	150	169	Right-handed alpha
Helix 25	AC7	B	177	195	Right-handed alpha
Helix 26	AC8	B	203	214	Right-handed alpha
Helix 27	AC9	B	242	251	Right-handed alpha
Helix 28	AD1	B	256	268	Right-handed alpha
Helix 29	AD2	B	272	283	Right-handed alpha
Helix 30	AD3	B	311	324	Right-handed alpha
Helix 31	AD4	B	368	374	Right-handed alpha
Helix 32	AD5	B	419	427	Right-handed alpha
Helix 33	AD6	B	443	448	Right-handed alpha
Helix 34	AD7	B	459	476	Right-handed alpha
Helix 35	AD8	B	486	498	Right-handed alpha
Helix 36	AD9	B	500	510	Right-handed alpha
Helix 37	AE1	B	517	529	Right-handed alpha
Helix 38	AE2	B	533	537	Right-handed 310
Helix 39	AE3	B	539	543	Right-handed 310
Helix 40	AE4	B	544	559	Right-handed alpha
Helix 41	AE5	B	579	583	Right-handed alpha
Helix 42	AE6	B	584	592	Right-handed alpha
Helix 43	AE7	B	606	611	Right-handed alpha
Helix 44	AE8	B	617	621	Right-handed 310
Helix 45	AE9	B	631	640	Right-handed alpha
Helix 46	AF1	B	677	682	Right-handed 310
Helix 47	AF2	B	686	693	Right-handed alpha
Helix 48	AF3	B	740	746	Right-handed alpha
Helix 49	AF4	B	766	779	Right-handed alpha
Helix 50	AF5	B	801	812	Right-handed alpha
Helix 51	AF6	B	834	839	Right-handed alpha
Helix 52	AF7	B	841	849	Right-handed alpha
Helix 53	AF8	B	877	897	Right-handed alpha
Helix 54	AF9	B	908	912	Right-handed 310
Helix 55	AG1	B	944	951	Right-handed alpha
Helix 56	AG2	B	965	972	Right-handed alpha
Helix 57	AG3	B	973	977	Right-handed 310
Helix 58	AG4	B	1002	1007	Right-handed 310
Helix 59	AG5	B	1014	1022	Right-handed alpha
Helix 60	AG6	B	1026	1031	Right-handed 310
Helix 61	AG7	B	1037	1041	Right-handed 310
Helix 62	AG8	B	1073	1085	Right-handed alpha
Helix 63	AG9	B	1096	1117	Right-handed alpha
Helix 64	AH1	B	1151	1156	Right-handed alpha
Helix 65	AH2	B	1158	1169	Right-handed alpha
Helix 66	AH3	B	1172	1190	Right-handed alpha
Helix 67	AH4	B	1207	1214	Right-handed alpha
Helix 68	AH5	C	9	22	Right-handed alpha
Helix 69	AH6	C	56	58	Right-handed 310
Helix 70	AH7	C	73	82	Right-handed alpha
Helix 71	AH8	C	138	152	Right-handed alpha
Helix 72	AH9	C	201	209	Right-handed alpha
Helix 73	AI1	D	9	22	Right-handed alpha
Helix 74	AI2	D	56	58	Right-handed 310
Helix 75	AI3	D	73	82	Right-handed alpha
Helix 76	AI4	D	138	152	Right-handed alpha
Helix 77	AI5	D	201	209	Right-handed alpha

There are 21 sheets in PDB entry 6T8H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	60	62	first strand
Strand 2	E	3	7	anti-parallel
Strand 3	E	88	93	anti-parallel
Strand 4	E	98	104	anti-parallel
Strand 5	E	108	114	anti-parallel
Strand 6	C	174	180	anti-parallel
Strand 7	C	163	169	anti-parallel
Strand 8	C	154	160	anti-parallel
Strand 9	C	195	200	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	67	72	first strand
Strand 2	E	26	31	anti-parallel
Strand 3	E	35	41	anti-parallel
Strand 4	E	47	54	anti-parallel
Strand 5	E	237	243	anti-parallel
Strand 6	E	227	233	anti-parallel
Strand 7	E	216	221	anti-parallel
Strand 8	E	132	137	anti-parallel
Strand 9	E	188	191	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	195	200	first strand
Strand 2	E	154	160	anti-parallel
Strand 3	E	163	169	anti-parallel
Strand 4	E	174	180	anti-parallel
Strand 5	D	108	114	anti-parallel
Strand 6	D	98	104	anti-parallel
Strand 7	D	88	93	anti-parallel
Strand 8	D	3	7	anti-parallel
Strand 9	D	60	62	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	199	201	first strand
Strand 2	A	484	488	anti-parallel
Strand 3	A	491	495	anti-parallel
Strand 4	A	555	558	parallel
Strand 5	A	572	576	parallel
Strand 6	A	565	569	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	278	first strand
Strand 2	A	282	288	anti-parallel
Strand 3	A	293	299	anti-parallel
Strand 4	A	328	335	parallel
Strand 5	A	316	324	anti-parallel
Strand 6	A	267	278	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	477	479	first strand
Strand 2	A	443	447	parallel
Strand 3	A	396	402	parallel
Strand 4	A	354	358	parallel
Strand 5	A	598	603	anti-parallel
Strand 6	A	608	614	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	44	first strand
Strand 2	B	991	992	parallel
Strand 3	B	927	936	parallel
Strand 4	B	872	876	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	44	first strand
Strand 2	B	991	992	parallel
Strand 3	B	927	936	parallel
Strand 4	B	916	920	anti-parallel
Strand 5	B	959	964	anti-parallel
Strand 6	B	825	829	anti-parallel
Strand 7	B	941	943	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	129	first strand
Strand 2	B	137	143	anti-parallel
Strand 3	B	217	220	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	340	342	first strand
Strand 2	B	654	655	anti-parallel
Strand 3	B	386	387	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	353	354	first strand
Strand 2	B	440	441	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	414	416	first strand
Strand 2	B	406	409	anti-parallel
Strand 3	B	430	435	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	560	562	first strand
Strand 2	B	574	578	anti-parallel
Strand 3	B	602	605	anti-parallel
Strand 4	B	597	599	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	565	566	first strand
Strand 2	B	569	570	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	697	701	first strand
Strand 2	B	761	765	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	712	713	first strand
Strand 2	B	704	705	anti-parallel
Strand 3	B	726	730	anti-parallel
Strand 4	B	737	739	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	832	833	first strand
Strand 2	B	866	867	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1121	1122	first strand
Strand 2	B	1147	1148	anti-parallel

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There are 9 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	62	first strand
Strand 2	C	3	7	anti-parallel
Strand 3	C	88	93	anti-parallel
Strand 4	C	98	104	anti-parallel
Strand 5	C	108	114	anti-parallel
Strand 6	D	174	180	anti-parallel
Strand 7	D	163	169	anti-parallel
Strand 8	D	154	160	anti-parallel
Strand 9	D	195	200	anti-parallel

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There are 9 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	72	first strand
Strand 2	C	26	31	anti-parallel
Strand 3	C	35	41	anti-parallel
Strand 4	C	47	54	anti-parallel
Strand 5	C	237	243	anti-parallel
Strand 6	C	227	233	anti-parallel
Strand 7	C	216	221	anti-parallel
Strand 8	C	132	137	anti-parallel
Strand 9	C	188	191	anti-parallel

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There are 9 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	67	72	first strand
Strand 2	D	26	31	anti-parallel
Strand 3	D	35	41	anti-parallel
Strand 4	D	47	54	anti-parallel
Strand 5	D	237	243	anti-parallel
Strand 6	D	227	233	anti-parallel
Strand 7	D	216	221	anti-parallel
Strand 8	D	132	137	anti-parallel
Strand 9	D	188	191	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6T8H

Analysis of interatomic Contacts of Structural Units in PDB entry:
6T8H