Analysis of interatomic Contacts of Structural Units in PDB entry:
6T8O

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6T8O entry

There are 8 chains in PDB entry 6T8O (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 315	LEU 721
B	LEU 315	LEU 721
C	LEU 315	ALA 722
D	LEU 315	ALA 722
E	LEU 315	LEU 721
F	LEU 315	LEU 721
G	A 1	A 13
H	T 1	T 13

There are 96 helices in PDB entry 6T8O. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	317	321	Right-handed 310
Helix 2	AA2	A	332	349	Right-handed alpha
Helix 3	AA3	A	377	392	Right-handed alpha
Helix 4	AA4	A	423	428	Right-handed alpha
Helix 5	AA5	A	429	434	Right-handed alpha
Helix 6	AA6	A	472	485	Right-handed alpha
Helix 7	AA7	A	503	508	Right-handed 310
Helix 8	AA8	A	520	546	Right-handed alpha
Helix 9	AA9	A	549	560	Right-handed alpha
Helix 10	AB1	A	596	604	Right-handed alpha
Helix 11	AB2	A	606	617	Right-handed alpha
Helix 12	AB3	A	656	664	Right-handed alpha
Helix 13	AB4	A	697	710	Right-handed alpha
Helix 14	AB5	A	717	721	Right-handed 310
Helix 15	AB6	B	317	321	Right-handed 310
Helix 16	AB7	B	332	350	Right-handed alpha
Helix 17	AB8	B	378	383	Right-handed alpha
Helix 18	AB9	B	384	392	Right-handed alpha
Helix 19	AC1	B	422	428	Right-handed alpha
Helix 20	AC2	B	429	434	Right-handed alpha
Helix 21	AC3	B	457	459	Right-handed 310
Helix 22	AC4	B	471	487	Right-handed alpha
Helix 23	AC5	B	502	508	Right-handed 310
Helix 24	AC6	B	520	546	Right-handed alpha
Helix 25	AC7	B	549	563	Right-handed alpha
Helix 26	AC8	B	596	604	Right-handed alpha
Helix 27	AC9	B	606	619	Right-handed alpha
Helix 28	AD1	B	639	646	Right-handed alpha
Helix 29	AD2	B	659	663	Right-handed 310
Helix 30	AD3	B	697	710	Right-handed alpha
Helix 31	AD4	C	332	349	Right-handed alpha
Helix 32	AD5	C	378	383	Right-handed alpha
Helix 33	AD6	C	384	391	Right-handed alpha
Helix 34	AD7	C	422	428	Right-handed alpha
Helix 35	AD8	C	429	434	Right-handed alpha
Helix 36	AD9	C	472	485	Right-handed alpha
Helix 37	AE1	C	503	508	Right-handed 310
Helix 38	AE2	C	520	546	Right-handed alpha
Helix 39	AE3	C	549	563	Right-handed alpha
Helix 40	AE4	C	596	604	Right-handed alpha
Helix 41	AE5	C	605	619	Right-handed alpha
Helix 42	AE6	C	641	646	Right-handed alpha
Helix 43	AE7	C	656	664	Right-handed alpha
Helix 44	AE8	C	668	672	Right-handed 310
Helix 45	AE9	C	697	710	Right-handed alpha
Helix 46	AF1	C	717	721	Right-handed 310
Helix 47	AF2	D	317	321	Right-handed 310
Helix 48	AF3	D	332	350	Right-handed alpha
Helix 49	AF4	D	378	383	Right-handed alpha
Helix 50	AF5	D	384	392	Right-handed alpha
Helix 51	AF6	D	422	428	Right-handed alpha
Helix 52	AF7	D	429	434	Right-handed alpha
Helix 53	AF8	D	457	459	Right-handed 310
Helix 54	AF9	D	472	485	Right-handed alpha
Helix 55	AG1	D	503	508	Right-handed 310
Helix 56	AG2	D	521	546	Right-handed alpha
Helix 57	AG3	D	549	563	Right-handed alpha
Helix 58	AG4	D	596	604	Right-handed alpha
Helix 59	AG5	D	605	617	Right-handed alpha
Helix 60	AG6	D	639	646	Right-handed alpha
Helix 61	AG7	D	656	664	Right-handed alpha
Helix 62	AG8	D	668	672	Right-handed 310
Helix 63	AG9	D	697	712	Right-handed alpha
Helix 64	AH1	D	717	721	Right-handed 310
Helix 65	AH2	E	317	321	Right-handed 310
Helix 66	AH3	E	332	349	Right-handed alpha
Helix 67	AH4	E	378	383	Right-handed alpha
Helix 68	AH5	E	384	391	Right-handed alpha
Helix 69	AH6	E	422	428	Right-handed alpha
Helix 70	AH7	E	429	434	Right-handed alpha
Helix 71	AH8	E	472	485	Right-handed alpha
Helix 72	AH9	E	520	546	Right-handed alpha
Helix 73	AI1	E	549	563	Right-handed alpha
Helix 74	AI2	E	596	604	Right-handed alpha
Helix 75	AI3	E	605	619	Right-handed alpha
Helix 76	AI4	E	639	644	Right-handed alpha
Helix 77	AI5	E	656	664	Right-handed alpha
Helix 78	AI6	E	668	672	Right-handed 310
Helix 79	AI7	E	697	710	Right-handed alpha
Helix 80	AI8	F	317	321	Right-handed 310
Helix 81	AI9	F	332	350	Right-handed alpha
Helix 82	AJ1	F	378	383	Right-handed alpha
Helix 83	AJ2	F	384	392	Right-handed alpha
Helix 84	AJ3	F	422	428	Right-handed alpha
Helix 85	AJ4	F	429	434	Right-handed alpha
Helix 86	AJ5	F	457	459	Right-handed 310
Helix 87	AJ6	F	471	485	Right-handed alpha
Helix 88	AJ7	F	503	508	Right-handed 310
Helix 89	AJ8	F	520	546	Right-handed alpha
Helix 90	AJ9	F	549	563	Right-handed alpha
Helix 91	AK1	F	596	605	Right-handed alpha
Helix 92	AK2	F	605	619	Right-handed alpha
Helix 93	AK3	F	639	646	Right-handed alpha
Helix 94	AK4	F	656	665	Right-handed alpha
Helix 95	AK5	F	697	712	Right-handed alpha
Helix 96	AK6	F	717	721	Right-handed 310

There are 16 sheets in PDB entry 6T8O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	360	first strand
Strand 2	A	365	372	anti-parallel
Strand 3	A	409	414	anti-parallel
Strand 4	A	398	400	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	440	445	first strand
Strand 2	A	451	455	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	492	497	first strand
Strand 2	A	589	594	parallel
Strand 3	A	624	629	parallel
Strand 4	A	462	465	parallel
Strand 5	A	649	651	parallel
Strand 6	A	678	681	anti-parallel
Strand 7	A	689	691	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	356	360	first strand
Strand 2	B	365	370	anti-parallel
Strand 3	B	409	414	anti-parallel
Strand 4	B	398	400	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	440	445	first strand
Strand 2	B	451	455	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	492	497	first strand
Strand 2	B	589	594	parallel
Strand 3	B	624	630	parallel
Strand 4	B	461	465	parallel
Strand 5	B	649	651	parallel
Strand 6	B	677	680	anti-parallel
Strand 7	B	689	692	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	361	first strand
Strand 2	C	365	372	anti-parallel
Strand 3	C	409	414	anti-parallel
Strand 4	C	398	400	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	440	445	first strand
Strand 2	C	451	455	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	492	495	first strand
Strand 2	C	589	594	parallel
Strand 3	C	624	629	parallel
Strand 4	C	462	465	parallel
Strand 5	C	649	651	parallel
Strand 6	C	677	681	anti-parallel
Strand 7	C	689	692	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	354	361	first strand
Strand 2	D	365	372	anti-parallel
Strand 3	D	409	414	anti-parallel
Strand 4	D	398	400	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	451	455	first strand
Strand 2	D	440	445	anti-parallel
Strand 3	D	689	693	anti-parallel
Strand 4	D	677	681	anti-parallel
Strand 5	D	649	651	anti-parallel
Strand 6	D	461	465	parallel
Strand 7	D	624	629	parallel
Strand 8	D	589	594	parallel
Strand 9	D	492	497	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	354	360	first strand
Strand 2	E	365	372	anti-parallel
Strand 3	E	409	414	anti-parallel
Strand 4	E	398	400	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	440	445	first strand
Strand 2	E	451	455	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	492	497	first strand
Strand 2	E	589	594	parallel
Strand 3	E	625	629	parallel
Strand 4	E	461	464	parallel
Strand 5	E	649	651	parallel
Strand 6	E	677	681	anti-parallel
Strand 7	E	689	692	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	354	360	first strand
Strand 2	F	365	372	anti-parallel
Strand 3	F	409	414	anti-parallel
Strand 4	F	398	400	anti-parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	451	455	first strand
Strand 2	F	440	445	anti-parallel
Strand 3	F	689	693	anti-parallel
Strand 4	F	677	681	anti-parallel
Strand 5	F	649	651	anti-parallel
Strand 6	F	461	465	parallel
Strand 7	F	625	627	parallel
Strand 8	F	591	594	parallel
Strand 9	F	494	497	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6T8O

Analysis of interatomic Contacts of Structural Units in PDB entry:
6T8O