Analysis of interatomic Contacts of Structural Units in PDB entry:
6TM1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6TM1 entry

There are 3 chains in PDB entry 6TM1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 SER 1694THR 2150
A
 ALA 3PRO 179
C
 SER 1694ILE 2149
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 6TM1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
1695 1713Right-handed alpha
Helix 2
AA2
B
1715 1737Right-handed alpha
Helix 3
AA3
B
1777 1781Right-handed 310
Helix 4
AA4
B
1784 1791Right-handed 310
Helix 5
AA5
B
1805 1823Right-handed alpha
Helix 6
AA6
B
1829 1844Right-handed alpha
Helix 7
AA7
B
1846 1865Right-handed alpha
Helix 8
AA8
B
1905 1919Right-handed alpha
Helix 9
AA9
B
1959 1964Right-handed alpha
Helix 10
AB1
B
2029 2045Right-handed alpha
Helix 11
AB2
B
2053 2065Right-handed alpha
Helix 12
AB3
B
2074 2081Right-handed alpha
Helix 13
AB4
B
2092 2116Right-handed alpha
Helix 14
AB5
B
2122 2146Right-handed alpha
Helix 15
AB6
A
15 25Right-handed alpha
Helix 16
AB7
A
68 72Right-handed 310
Helix 17
AB8
A
86 97Right-handed alpha
Helix 18
AB9
A
97 102Right-handed alpha
Helix 19
AC1
A
117 121Right-handed 310
Helix 20
AC2
A
122 133Right-handed alpha
Helix 21
AC3
A
138 149Right-handed alpha
Helix 22
AC4
A
166 178Right-handed alpha
Helix 23
AC5
C
1698 1714Right-handed alpha
Helix 24
AC6
C
1715 1737Right-handed alpha
Helix 25
AC7
C
1784 1788Right-handed 310
Helix 26
AC8
C
1805 1824Right-handed alpha
Helix 27
AC9
C
1825 1827Right-handed 310
Helix 28
AD1
C
1828 1833Right-handed alpha
Helix 29
AD2
C
1835 1843Right-handed alpha
Helix 30
AD3
C
1846 1867Right-handed alpha
Helix 31
AD4
C
1906 1918Right-handed alpha
Helix 32
AD5
C
1959 1964Right-handed alpha
Helix 33
AD6
C
1965 1966Right-handed 310
Helix 34
AD7
C
1967 1972Right-handed 310
Helix 35
AD8
C
2027 2049Right-handed alpha
Helix 36
AD9
C
2054 2064Right-handed alpha
Helix 37
AE1
C
2073 2079Right-handed 310
Helix 38
AE2
C
2098 2107Right-handed alpha
Helix 39
AE3
C
2109 2119Right-handed alpha
Helix 40
AE4
C
2125 2138Right-handed alpha
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There are 7 sheets in PDB entry 6TM1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1895 1899first strand
Strand 2
B
1877 1883anti-parallel
Strand 3
B
1946 1951anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1953 1954first strand
Strand 2
B
1976 1982anti-parallel
Strand 3
B
1998 2004anti-parallel
Strand 4
B
2022 2026anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 8first strand
Strand 2
A
56 57parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 45first strand
Strand 2
A
50 54anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 83first strand
Strand 2
A
110 115parallel
Strand 3
A
155 156parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1947 1952first strand
Strand 2
C
1876 1882anti-parallel
Strand 3
C
1896 1900anti-parallel
Strand 4
C
2015 2020anti-parallel
Strand 5
C
1998 2009anti-parallel
Strand 6
C
1974 1979anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1947 1952first strand
Strand 2
C
1876 1882anti-parallel
Strand 3
C
1896 1900anti-parallel
Strand 4
C
2015 2020anti-parallel
Strand 5
C
1998 2009anti-parallel
Strand 6
C
2023 2026anti-parallel
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