Analysis of interatomic Contacts of Structural Units in PDB entry:
6TOS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6TOS entry

There are 2 chains in PDB entry 6TOS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 27LEU 377
B
 TYR 39LEU 377
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 25 helices in PDB entry 6TOS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 39Right-handed alpha
Helix 2
AA2
A
39 74Right-handed alpha
Helix 3
AA3
A
75 78Right-handed 310
Helix 4
AA4
A
79 110Right-handed alpha
Helix 5
AA5
A
114 149Right-handed alpha
Helix 6
AA6
A
157 176Right-handed alpha
Helix 7
AA7
A
176 182Right-handed alpha
Helix 8
AA8
A
210 224Right-handed alpha
Helix 9
AA9
A
224 243Right-handed alpha
Helix 10
AB1
A
287 323Right-handed alpha
Helix 11
AB2
A
332 362Right-handed alpha
Helix 12
AB3
A
362 376Right-handed alpha
Helix 13
AB4
B
44 74Right-handed alpha
Helix 14
AB5
B
75 78Right-handed 310
Helix 15
AB6
B
79 98Right-handed alpha
Helix 16
AB7
B
98 110Right-handed alpha
Helix 17
AB8
B
114 150Right-handed alpha
Helix 18
AB9
B
157 176Right-handed alpha
Helix 19
AC1
B
176 182Right-handed alpha
Helix 20
AC2
B
189 195Right-handed 310
Helix 21
AC3
B
209 224Right-handed alpha
Helix 22
AC4
B
224 244Right-handed alpha
Helix 23
AC5
B
251 323Right-handed alpha
Helix 24
AC6
B
332 362Right-handed alpha
Helix 25
AC7
B
362 377Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 6TOS. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 188first strand
Strand 2
A
199 204anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
183 187first strand
Strand 2
B
200 204anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il