Analysis of interatomic Contacts of Structural Units in PDB entry:
6TPJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6TPJ entry

There are 4 chains in PDB entry 6TPJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 47SER 146
A
 ILE 148HIS 388
B
 ARG 45SER 146
B
 ILE 148HIS 388
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 6TPJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
53 82Right-handed alpha
Helix 2
AA2
A
83 86Right-handed 310
Helix 3
AA3
A
87 107Right-handed alpha
Helix 4
AA4
A
107 118Right-handed alpha
Helix 5
AA5
A
122 157Right-handed alpha
Helix 6
AA6
A
165 184Right-handed alpha
Helix 7
AA7
A
184 190Right-handed alpha
Helix 8
AA8
A
217 232Right-handed alpha
Helix 9
AA9
A
232 252Right-handed alpha
Helix 10
AB1
A
1008 1012Right-handed 310
Helix 11
AB2
A
1015 1027Right-handed alpha
Helix 12
AB3
A
1047 1060Right-handed alpha
Helix 13
AB4
A
1061 1065Right-handed 310
Helix 14
AB5
A
1076 1090Right-handed alpha
Helix 15
AB6
A
1101 1112Right-handed alpha
Helix 16
AB7
A
1125 1134Right-handed alpha
Helix 17
AB8
A
1143 1150Right-handed alpha
Helix 18
AB9
A
1162 1178Right-handed alpha
Helix 19
AC1
A
1181 329Right-handed alpha
Helix 20
AC2
A
338 368Right-handed alpha
Helix 21
AC3
A
368 383Right-handed alpha
Helix 22
AC4
B
53 82Right-handed alpha
Helix 23
AC5
B
83 86Right-handed 310
Helix 24
AC6
B
87 107Right-handed alpha
Helix 25
AC7
B
107 118Right-handed alpha
Helix 26
AC8
B
122 157Right-handed alpha
Helix 27
AC9
B
165 184Right-handed alpha
Helix 28
AD1
B
184 190Right-handed alpha
Helix 29
AD2
B
217 232Right-handed alpha
Helix 30
AD3
B
232 252Right-handed alpha
Helix 31
AD4
B
1008 1012Right-handed 310
Helix 32
AD5
B
1015 1027Right-handed alpha
Helix 33
AD6
B
1047 1060Right-handed alpha
Helix 34
AD7
B
1061 1065Right-handed 310
Helix 35
AD8
B
1076 1090Right-handed alpha
Helix 36
AD9
B
1101 1110Right-handed alpha
Helix 37
AE1
B
1125 1134Right-handed alpha
Helix 38
AE2
B
1143 1150Right-handed alpha
Helix 39
AE3
B
1162 1177Right-handed alpha
Helix 40
AE4
B
1181 329Right-handed alpha
Helix 41
AE5
B
339 368Right-handed alpha
Helix 42
AE6
B
368 383Right-handed alpha
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There are 4 sheets in PDB entry 6TPJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 196first strand
Strand 2
A
207 212anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1093 1096first strand
Strand 2
A
1067 1072parallel
Strand 3
A
1033 1038parallel
Strand 4
A
1114 1117parallel
Strand 5
A
1137 1141parallel
Strand 6
A
1156 1158parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
191 196first strand
Strand 2
B
207 212anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1093 1096first strand
Strand 2
B
1067 1072parallel
Strand 3
B
1033 1038parallel
Strand 4
B
1114 1117parallel
Strand 5
B
1137 1141parallel
Strand 6
B
1156 1158parallel
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