Analysis of interatomic Contacts of Structural Units in PDB entry:
6TPN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6TPN entry

There are 2 chains in PDB entry 6TPN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
THR 32ASP 1003
A
SER 1005HIS 388
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 6TPN. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
38 44Right-handed alpha
Helix 2
AA2
A
53 82Right-handed alpha
Helix 3
AA3
A
83 86Right-handed 310
Helix 4
AA4
A
87 107Right-handed alpha
Helix 5
AA5
A
107 118Right-handed alpha
Helix 6
AA6
A
122 157Right-handed alpha
Helix 7
AA7
A
165 184Right-handed alpha
Helix 8
AA8
A
184 190Right-handed alpha
Helix 9
AA9
A
218 232Right-handed alpha
Helix 10
AB1
A
232 252Right-handed alpha
Helix 11
AB2
A
1015 1027Right-handed alpha
Helix 12
AB3
A
1047 1059Right-handed alpha
Helix 13
AB4
A
1060 1065Right-handed 310
Helix 14
AB5
A
1076 1090Right-handed alpha
Helix 15
AB6
A
1101 1110Right-handed alpha
Helix 16
AB7
A
1125 1133Right-handed alpha
Helix 17
AB8
A
1143 1150Right-handed alpha
Helix 18
AB9
A
1162 1177Right-handed alpha
Helix 19
AC1
A
1181 329Right-handed alpha
Helix 20
AC2
A
338 368Right-handed alpha
Helix 21
AC3
A
368 384Right-handed alpha
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There are 2 sheets in PDB entry 6TPN. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
191 196first strand
Strand 2
A
207 212anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1093 1096first strand
Strand 2
A
1067 1072parallel
Strand 3
A
1033 1038parallel
Strand 4
A
1114 1117parallel
Strand 5
A
1137 1141parallel
Strand 6
A
1156 1158parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il