Analysis of interatomic Contacts of Structural Units in PDB entry:
6U62

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6U62 entry

There are 8 chains in PDB entry 6U62 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 21	LYS 1332
B	ALA 5	ARG 302
C	SER 59	VAL 371
D	ARG 47	PRO 161
E	MET 1	ALA 124
F	ASP 3	GLU 122
G	LEU 5	ARG 92
H	MET 1	MET 89

There are 85 helices in PDB entry 6U62. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	32	37	Right-handed alpha
Helix 2	AA2	A	84	88	Right-handed 310
Helix 3	AA3	A	94	112	Right-handed alpha
Helix 4	AA4	A	127	141	Right-handed alpha
Helix 5	AA5	A	169	172	Right-handed 310
Helix 6	AA6	A	178	186	Right-handed alpha
Helix 7	AA7	A	199	219	Right-handed alpha
Helix 8	AA8	A	261	269	Right-handed alpha
Helix 9	AA9	A	269	280	Right-handed alpha
Helix 10	AB1	A	291	296	Right-handed alpha
Helix 11	AB2	A	309	328	Right-handed alpha
Helix 12	AB3	A	331	338	Right-handed alpha
Helix 13	AB4	A	340	357	Right-handed alpha
Helix 14	AB5	A	377	392	Right-handed alpha
Helix 15	AB6	A	393	396	Right-handed 310
Helix 16	AB7	A	407	423	Right-handed alpha
Helix 17	AB8	A	432	440	Right-handed alpha
Helix 18	AB9	A	445	458	Right-handed alpha
Helix 19	AC1	A	460	471	Right-handed alpha
Helix 20	AC2	A	472	479	Right-handed alpha
Helix 21	AC3	A	480	482	Right-handed 310
Helix 22	AC4	A	487	500	Right-handed alpha
Helix 23	AC5	A	502	504	Right-handed 310
Helix 24	AC6	A	505	512	Right-handed alpha
Helix 25	AC7	A	514	524	Right-handed alpha
Helix 26	AC8	A	531	543	Right-handed alpha
Helix 27	AC9	A	546	556	Right-handed alpha
Helix 28	AD1	A	557	564	Right-handed alpha
Helix 29	AD2	A	570	585	Right-handed alpha
Helix 30	AD3	A	588	597	Right-handed alpha
Helix 31	AD4	A	599	604	Right-handed alpha
Helix 32	AD5	A	605	610	Right-handed 310
Helix 33	AD6	A	614	627	Right-handed alpha
Helix 34	AD7	A	636	649	Right-handed alpha
Helix 35	AD8	A	650	653	Right-handed 310
Helix 36	AD9	A	656	674	Right-handed alpha
Helix 37	AE1	A	674	689	Right-handed alpha
Helix 38	AE2	A	690	692	Right-handed 310
Helix 39	AE3	A	780	790	Right-handed alpha
Helix 40	AE4	A	806	820	Right-handed alpha
Helix 41	AE5	A	823	844	Right-handed alpha
Helix 42	AE6	A	918	923	Right-handed alpha
Helix 43	AE7	A	958	964	Right-handed alpha
Helix 44	AE8	A	965	969	Right-handed 310
Helix 45	AE9	A	982	1005	Right-handed alpha
Helix 46	AF1	B	19	29	Right-handed alpha
Helix 47	AF2	B	32	39	Right-handed 310
Helix 48	AF3	B	66	72	Right-handed alpha
Helix 49	AF4	B	77	82	Right-handed alpha
Helix 50	AF5	B	100	117	Right-handed alpha
Helix 51	AF6	B	128	132	Right-handed 310
Helix 52	AF7	B	136	149	Right-handed alpha
Helix 53	AF8	B	167	177	Right-handed alpha
Helix 54	AF9	B	178	180	Right-handed 310
Helix 55	AG1	B	183	198	Right-handed alpha
Helix 56	AG2	B	226	244	Right-handed alpha
Helix 57	AG3	B	282	293	Right-handed alpha
Helix 58	AG4	B	293	298	Right-handed alpha
Helix 59	AG5	B	299	301	Right-handed 310
Helix 60	AG6	C	73	82	Right-handed alpha
Helix 61	AG7	C	132	137	Right-handed alpha
Helix 62	AG8	C	152	168	Right-handed alpha
Helix 63	AG9	C	179	183	Right-handed 310
Helix 64	AH1	C	184	205	Right-handed alpha
Helix 65	AH2	C	223	235	Right-handed alpha
Helix 66	AH3	C	239	254	Right-handed alpha
Helix 67	AH4	C	278	300	Right-handed alpha
Helix 68	AH5	C	344	347	Right-handed 310
Helix 69	AH6	C	348	367	Right-handed alpha
Helix 70	AH7	D	48	65	Right-handed alpha
Helix 71	AH8	D	78	95	Right-handed alpha
Helix 72	AH9	D	115	120	Right-handed alpha
Helix 73	AI1	D	128	143	Right-handed alpha
Helix 74	AI2	D	144	146	Right-handed 310
Helix 75	AI3	E	3	13	Right-handed alpha
Helix 76	AI4	E	41	62	Right-handed alpha
Helix 77	AI5	E	100	124	Right-handed alpha
Helix 78	AI6	F	4	12	Right-handed alpha
Helix 79	AI7	F	42	45	Right-handed 310
Helix 80	AI8	F	46	61	Right-handed alpha
Helix 81	AI9	F	99	120	Right-handed alpha
Helix 82	AJ1	G	36	50	Right-handed alpha
Helix 83	AJ2	H	4	15	Right-handed alpha
Helix 84	AJ3	H	38	42	Right-handed 310
Helix 85	AJ4	H	44	54	Right-handed alpha

There are 16 sheets in PDB entry 6U62. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	123	first strand
Strand 2	A	57	65	parallel
Strand 3	A	145	152	parallel
Strand 4	A	190	195	parallel
Strand 5	A	242	243	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	167	first strand
Strand 2	A	174	175	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1015	1021	first strand
Strand 2	A	1324	1329	anti-parallel
Strand 3	A	1316	1320	anti-parallel
Strand 4	A	1304	1309	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1028	1031	first strand
Strand 2	A	1038	1041	anti-parallel
Strand 3	A	1045	1049	anti-parallel
Strand 4	A	1056	1061	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1070	1076	first strand
Strand 2	A	1083	1088	anti-parallel
Strand 3	A	1092	1097	anti-parallel
Strand 4	A	1107	1113	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1127	1131	first strand
Strand 2	A	1137	1142	anti-parallel
Strand 3	A	1146	1151	anti-parallel
Strand 4	A	1157	1162	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1171	1175	first strand
Strand 2	A	1180	1184	anti-parallel
Strand 3	A	1190	1193	anti-parallel
Strand 4	A	1203	1207	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1214	1217	first strand
Strand 2	A	1228	1231	anti-parallel
Strand 3	A	1237	1238	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1258	1261	first strand
Strand 2	A	1268	1271	anti-parallel
Strand 3	A	1277	1280	anti-parallel
Strand 4	A	1286	1290	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	53	first strand
Strand 2	B	56	62	anti-parallel
Strand 3	B	7	14	parallel
Strand 4	B	85	93	parallel
Strand 5	B	121	127	parallel
Strand 6	B	157	161	parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	213	218	first strand
Strand 2	B	202	207	anti-parallel
Strand 3	B	270	276	anti-parallel
Strand 4	B	260	267	anti-parallel
Strand 5	B	249	254	anti-parallel
Strand 6	C	315	320	anti-parallel
Strand 7	C	324	330	anti-parallel
Strand 8	C	335	342	anti-parallel
Strand 9	C	258	263	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	111	114	first strand
Strand 2	C	63	68	parallel
Strand 3	C	139	145	parallel
Strand 4	C	172	178	parallel
Strand 5	C	213	217	parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	31	36	first strand
Strand 2	E	19	25	anti-parallel
Strand 3	E	90	95	anti-parallel
Strand 4	E	80	85	anti-parallel
Strand 5	E	69	75	anti-parallel
Strand 6	F	70	75	anti-parallel
Strand 7	F	79	83	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	31	33	first strand
Strand 2	F	21	26	anti-parallel
Strand 3	F	88	93	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	66	69	first strand
Strand 2	G	74	80	anti-parallel
Strand 3	G	83	86	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	30	35	first strand
Strand 2	H	18	24	anti-parallel
Strand 3	H	85	88	anti-parallel
Strand 4	H	72	76	anti-parallel
Strand 5	H	65	69	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6U62

Analysis of interatomic Contacts of Structural Units in PDB entry:
6U62