Analysis of interatomic Contacts of Structural Units in PDB entry:
6UD7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6UD7 entry

There are 3 chains in PDB entry 6UD7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 32	LEU 600
B	SER 2	HIS 1140
C	GLY 248	PHE 295

There are 19 helices in PDB entry 6UD7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	47	Right-handed alpha
Helix 2	AA2	A	65	69	Right-handed alpha
Helix 3	AA3	A	232	237	Right-handed alpha
Helix 4	AA4	A	450	461	Right-handed alpha
Helix 5	AA5	A	543	562	Right-handed alpha
Helix 6	AA6	B	252	256	Right-handed 310
Helix 7	AA7	B	381	384	Right-handed 310
Helix 8	AA8	B	987	990	Right-handed 310
Helix 9	AA9	B	1044	1062	Right-handed alpha
Helix 10	AB1	B	1069	1075	Right-handed alpha
Helix 11	AB2	B	1091	1096	Right-handed alpha
Helix 12	AB3	B	1097	1099	Right-handed 310
Helix 13	AB4	B	1101	1105	Right-handed 310
Helix 14	AB5	B	1128	1132	Right-handed 310
Helix 15	AB6	B	1133	1138	Right-handed alpha
Helix 16	AB7	C	262	271	Right-handed alpha
Helix 17	AB8	C	272	274	Right-handed 310
Helix 18	AB9	C	300	312	Right-handed alpha
Helix 19	AC1	D	53	69	Right-handed alpha

There are 25 sheets in PDB entry 6UD7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	64	first strand
Strand 2	A	596	599	parallel
Strand 3	A	588	591	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	83	first strand
Strand 2	A	89	96	anti-parallel
Strand 3	A	106	113	anti-parallel
Strand 4	A	121	128	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	420	423	first strand
Strand 2	A	217	224	anti-parallel
Strand 3	A	178	186	anti-parallel
Strand 4	A	151	157	anti-parallel
Strand 5	A	139	144	anti-parallel
Strand 6	A	573	575	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	162	first strand
Strand 2	A	173	174	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	242	246	first strand
Strand 2	A	250	259	anti-parallel
Strand 3	A	440	449	anti-parallel
Strand 4	A	389	395	anti-parallel
Strand 5	A	430	432	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	468	482	first strand
Strand 2	A	487	498	anti-parallel
Strand 3	A	511	522	anti-parallel
Strand 4	A	528	533	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	468	482	first strand
Strand 2	A	487	498	anti-parallel
Strand 3	A	511	522	anti-parallel
Strand 4	A	537	538	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1004	1009	first strand
Strand 2	B	1024	1032	anti-parallel
Strand 3	B	1037	1043	anti-parallel
Strand 4	B	3	10	anti-parallel
Strand 5	B	1088	1090	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	21	first strand
Strand 2	B	30	35	anti-parallel
Strand 3	B	38	44	anti-parallel
Strand 4	B	49	56	anti-parallel
Strand 5	D	33	34	parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	67	first strand
Strand 2	B	76	81	anti-parallel
Strand 3	B	85	94	anti-parallel
Strand 4	B	97	107	anti-parallel
Strand 5	D	45	49	parallel
Strand 6	B	151	158	parallel
Strand 7	B	139	144	anti-parallel
Strand 8	B	130	134	anti-parallel
Strand 9	B	121	124	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	169	first strand
Strand 2	B	177	184	anti-parallel
Strand 3	B	187	196	anti-parallel
Strand 4	B	201	204	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	169	first strand
Strand 2	B	177	184	anti-parallel
Strand 3	B	187	196	anti-parallel
Strand 4	B	210	211	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	218	221	first strand
Strand 2	B	229	232	anti-parallel
Strand 3	B	237	241	anti-parallel
Strand 4	B	244	248	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	258	263	first strand
Strand 2	B	270	275	anti-parallel
Strand 3	B	279	289	anti-parallel
Strand 4	B	295	307	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	313	318	first strand
Strand 2	B	321	325	anti-parallel
Strand 3	B	331	336	anti-parallel
Strand 4	B	347	353	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	359	365	first strand
Strand 2	B	374	379	anti-parallel
Strand 3	B	386	392	anti-parallel
Strand 4	B	710	716	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	720	727	first strand
Strand 2	B	732	743	anti-parallel
Strand 3	B	749	751	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	720	727	first strand
Strand 2	B	732	743	anti-parallel
Strand 3	B	785	795	anti-parallel
Strand 4	B	801	806	anti-parallel
Strand 5	B	762	765	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	811	820	first strand
Strand 2	B	827	835	anti-parallel
Strand 3	B	846	853	anti-parallel
Strand 4	B	858	866	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	870	876	first strand
Strand 2	B	879	884	anti-parallel
Strand 3	B	887	893	anti-parallel
Strand 4	B	899	905	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	911	917	first strand
Strand 2	B	920	925	anti-parallel
Strand 3	B	930	936	anti-parallel
Strand 4	B	941	947	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	954	961	first strand
Strand 2	B	964	969	anti-parallel
Strand 3	B	973	979	anti-parallel
Strand 4	B	992	999	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1076	1077	first strand
Strand 2	B	1082	1083	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	276	283	first strand
Strand 2	C	290	298	anti-parallel
Strand 3	C	250	255	anti-parallel
Strand 4	C	322	325	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	315	316	first strand
Strand 2	C	319	320	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6UD7

Analysis of interatomic Contacts of Structural Units in PDB entry:
6UD7