Analysis of interatomic Contacts of Structural Units in PDB entry:
6UML


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6UML entry

There are 2 chains in PDB entry 6UML (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 2HIS 1140
C
ASN 48ASP 313
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 6UML. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
250 254Right-handed 310
Helix 2
AA2
A
381 384Right-handed 310
Helix 3
AA3
A
937 940Right-handed 310
Helix 4
AA4
A
1044 1062Right-handed alpha
Helix 5
AA5
A
1069 1075Right-handed alpha
Helix 6
AA6
A
1090 1095Right-handed alpha
Helix 7
AA7
A
1096 1099Right-handed 310
Helix 8
AA8
A
1101 1109Right-handed alpha
Helix 9
AA9
A
1125 1137Right-handed alpha
Helix 10
AB1
C
53 57Right-handed 310
Helix 11
AB2
C
103 114Right-handed alpha
Helix 12
AB3
C
199 204Right-handed alpha
Helix 13
AB4
C
221 232Right-handed alpha
Helix 14
AB5
C
233 238Right-handed 310
Helix 15
AB6
C
241 247Right-handed alpha
Helix 16
AB7
C
249 264Right-handed alpha
Helix 17
AB8
C
276 288Right-handed alpha
Helix 18
AB9
C
291 301Right-handed alpha
Helix 19
AC1
C
303 318Right-handed alpha
Helix 20
AC2
C
335 337Right-handed 310
Helix 21
AC3
E
421 430Right-handed alpha
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There are 28 sheets in PDB entry 6UML. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
3 10first strand
Strand 2
A
1037 1043anti-parallel
Strand 3
A
1025 1032anti-parallel
Strand 4
A
1004 1009anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
17 21first strand
Strand 2
A
30 34anti-parallel
Strand 3
A
39 43anti-parallel
Strand 4
A
50 55anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
61 67first strand
Strand 2
A
76 81anti-parallel
Strand 3
A
85 92anti-parallel
Strand 4
A
99 107anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
121 124first strand
Strand 2
A
130 134anti-parallel
Strand 3
A
139 144anti-parallel
Strand 4
A
155 158anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
164 169first strand
Strand 2
A
177 184anti-parallel
Strand 3
A
187 195anti-parallel
Strand 4
A
202 209anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
218 221first strand
Strand 2
A
229 232anti-parallel
Strand 3
A
237 241anti-parallel
Strand 4
A
244 248anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
258 263first strand
Strand 2
A
270 275anti-parallel
Strand 3
A
279 290anti-parallel
Strand 4
A
293 307anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
311 317first strand
Strand 2
A
321 326anti-parallel
Strand 3
A
331 337anti-parallel
Strand 4
A
346 353anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
361 365first strand
Strand 2
A
374 379anti-parallel
Strand 3
A
386 393anti-parallel
Strand 4
A
709 716anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
396 403first strand
Strand 2
A
698 704anti-parallel
Strand 3
A
690 694anti-parallel
Strand 4
A
678 682anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
409 413first strand
Strand 2
A
424 429anti-parallel
Strand 3
A
432 439anti-parallel
Strand 4
A
442 446anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
457 463first strand
Strand 2
A
467 472anti-parallel
Strand 3
A
476 480anti-parallel
Strand 4
A
486 490anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
507 512first strand
Strand 2
A
515 522anti-parallel
Strand 3
A
525 532anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
538 542first strand
Strand 2
A
555 560anti-parallel
Strand 3
A
565 570anti-parallel
Strand 4
A
579 581anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
588 595first strand
Strand 2
A
600 606anti-parallel
Strand 3
A
610 616anti-parallel
Strand 4
A
623 624anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
588 595first strand
Strand 2
A
600 606anti-parallel
Strand 3
A
610 616anti-parallel
Strand 4
A
628 630anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
637 643first strand
Strand 2
A
646 652anti-parallel
Strand 3
A
657 661anti-parallel
Strand 4
A
666 670anti-parallel
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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
720 727first strand
Strand 2
A
732 742anti-parallel
Strand 3
A
750 751anti-parallel
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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
720 727first strand
Strand 2
A
732 742anti-parallel
Strand 3
A
786 795anti-parallel
Strand 4
A
801 806anti-parallel
Strand 5
A
762 765parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
811 819first strand
Strand 2
A
828 835anti-parallel
Strand 3
A
848 854anti-parallel
Strand 4
A
857 862anti-parallel
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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
873 876first strand
Strand 2
A
879 884anti-parallel
Strand 3
A
887 893anti-parallel
Strand 4
A
899 906anti-parallel
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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
913 917first strand
Strand 2
A
920 924anti-parallel
Strand 3
A
930 936anti-parallel
Strand 4
A
941 948anti-parallel
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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
954 959first strand
Strand 2
A
964 969anti-parallel
Strand 3
A
973 978anti-parallel
Strand 4
A
993 999anti-parallel
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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
78 81first strand
Strand 2
C
180 184anti-parallel
Strand 3
C
152 166anti-parallel
Strand 4
C
96 101anti-parallel
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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
78 81first strand
Strand 2
C
180 184anti-parallel
Strand 3
C
152 166anti-parallel
Strand 4
C
136 149anti-parallel
Strand 5
C
119 122anti-parallel
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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
330 333first strand
Strand 2
C
320 323anti-parallel
Strand 3
C
422 425anti-parallel
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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
346 350first strand
Strand 2
C
356 362anti-parallel
Strand 3
C
413 418anti-parallel
Strand 4
C
397 404anti-parallel
Strand 5
C
384 391anti-parallel
Strand 6
C
368 375anti-parallel
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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
410 411first strand
Strand 2
E
418 419anti-parallel
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