Analysis of interatomic Contacts of Structural Units in PDB entry:
6UPQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6UPQ entry

There are 2 chains in PDB entry 6UPQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 36LYS 305
B
 PHE 40CYS 300
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 6UPQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
49 59Right-handed alpha
Helix 2
AA2
A
70 75Right-handed alpha
Helix 3
AA3
A
115 135Right-handed alpha
Helix 4
AA4
A
137 141Right-handed 310
Helix 5
AA5
A
161 172Right-handed alpha
Helix 6
AA6
A
183 187Right-handed 310
Helix 7
AA7
A
188 206Right-handed alpha
Helix 8
AA8
A
221 235Right-handed alpha
Helix 9
AA9
A
272 294Right-handed alpha
Helix 10
AB1
A
294 303Right-handed alpha
Helix 11
AB2
B
53 63Right-handed alpha
Helix 12
AB3
B
114 133Right-handed alpha
Helix 13
AB4
B
162 173Right-handed alpha
Helix 14
AB5
B
184 188Right-handed 310
Helix 15
AB6
B
192 207Right-handed alpha
Helix 16
AB7
B
269 278Right-handed alpha
Helix 17
AB8
B
281 292Right-handed alpha
Helix 18
AB9
B
292 299Right-handed alpha
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There are 4 sheets in PDB entry 6UPQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 90first strand
Strand 2
A
93 101anti-parallel
Strand 3
A
37 44parallel
Strand 4
A
148 153parallel
Strand 5
A
177 181parallel
Strand 6
A
237 238parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 247first strand
Strand 2
A
252 258anti-parallel
Strand 3
A
261 264anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
79 89first strand
Strand 2
B
92 102anti-parallel
Strand 3
B
41 47parallel
Strand 4
B
149 154parallel
Strand 5
B
178 182parallel
Strand 6
B
234 235parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
242 245first strand
Strand 2
B
248 255anti-parallel
Strand 3
B
258 261anti-parallel
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