Analysis of interatomic Contacts of Structural Units in PDB entry:
6UUN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6UUN entry

There are 7 chains in PDB entry 6UUN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 16	LEU 394
B	ASP 5	ASN 340
E	ASN 60	ARG 167
G	LYS 14	ARG 62
N	GLN 1	VAL 126
P	PHE 14	TYR 52
R	GLY 35	TYR 402

There are 35 helices in PDB entry 6UUN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	39	Right-handed alpha
Helix 2	AA2	A	234	239	Right-handed 310
Helix 3	AA3	A	264	279	Right-handed alpha
Helix 4	AA4	A	312	318	Right-handed 310
Helix 5	AA5	A	331	350	Right-handed alpha
Helix 6	AA6	A	372	391	Right-handed alpha
Helix 7	AA7	B	7	25	Right-handed alpha
Helix 8	AA8	B	29	34	Right-handed alpha
Helix 9	AA9	E	61	77	Right-handed alpha
Helix 10	AB1	E	78	83	Right-handed 310
Helix 11	AB2	E	89	106	Right-handed alpha
Helix 12	AB3	E	113	126	Right-handed alpha
Helix 13	AB4	E	142	155	Right-handed alpha
Helix 14	AB5	E	156	167	Right-handed alpha
Helix 15	AB6	G	15	22	Right-handed alpha
Helix 16	AB7	G	29	44	Right-handed alpha
Helix 17	AB8	G	45	48	Right-handed 310
Helix 18	AB9	N	62	65	Right-handed 310
Helix 19	AC1	P	20	22	Right-handed 310
Helix 20	AC2	P	23	34	Right-handed alpha
Helix 21	AC3	P	43	48	Right-handed alpha
Helix 22	AC4	R	36	55	Right-handed alpha
Helix 23	AC5	R	124	167	Right-handed alpha
Helix 24	AC6	R	171	196	Right-handed alpha
Helix 25	AC7	R	201	208	Right-handed alpha
Helix 26	AC8	R	209	242	Right-handed alpha
Helix 27	AC9	R	253	261	Right-handed alpha
Helix 28	AD1	R	263	279	Right-handed alpha
Helix 29	AD2	R	280	284	Right-handed 310
Helix 30	AD3	R	290	294	Right-handed 310
Helix 31	AD4	R	296	321	Right-handed alpha
Helix 32	AD5	R	333	345	Right-handed alpha
Helix 33	AD6	R	364	375	Right-handed alpha
Helix 34	AD7	R	375	385	Right-handed alpha
Helix 35	AD8	R	388	400	Right-handed alpha

There are 13 sheets in PDB entry 6UUN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	214	first strand
Strand 2	A	217	223	anti-parallel
Strand 3	A	40	46	parallel
Strand 4	A	243	247	parallel
Strand 5	A	286	290	parallel
Strand 6	A	359	362	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	89	94	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	105	first strand
Strand 2	B	111	115	anti-parallel
Strand 3	B	120	125	anti-parallel
Strand 4	B	134	140	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	165	170	anti-parallel
Strand 4	B	175	181	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	218	222	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	260	264	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	308	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	5	7	first strand
Strand 2	N	17	23	anti-parallel
Strand 3	N	78	84	anti-parallel
Strand 4	N	68	73	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	58	60	first strand
Strand 2	N	45	51	anti-parallel
Strand 3	N	34	39	anti-parallel
Strand 4	N	92	98	anti-parallel
Strand 5	N	122	124	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	64	65	first strand
Strand 2	R	78	79	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	68	69	first strand
Strand 2	R	74	75	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	82	87	first strand
Strand 2	R	100	105	anti-parallel
Strand 3	R	122	123	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6UUN

Analysis of interatomic Contacts of Structural Units in PDB entry:
6UUN