Analysis of interatomic Contacts of Structural Units in PDB entry:
6UXE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6UXE entry

There are 4 chains in PDB entry 6UXE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 55THR 455
B
 ALA 2ARG 86
C
 THR 2GLN 76
D
 ALA 34PRO 159
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 6UXE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
70 83Right-handed alpha
Helix 2
AA2
A
93 115Right-handed alpha
Helix 3
AA3
A
117 119Right-handed 310
Helix 4
AA4
A
126 142Right-handed alpha
Helix 5
AA5
A
156 169Right-handed alpha
Helix 6
AA6
A
185 193Right-handed alpha
Helix 7
AA7
A
214 225Right-handed alpha
Helix 8
AA8
A
257 259Right-handed 310
Helix 9
AA9
A
297 337Right-handed alpha
Helix 10
AB1
A
362 370Right-handed alpha
Helix 11
AB2
A
389 395Right-handed alpha
Helix 12
AB3
A
398 403Right-handed alpha
Helix 13
AB4
A
415 436Right-handed alpha
Helix 14
AB5
A
437 445Right-handed alpha
Helix 15
AB6
A
448 452Right-handed 310
Helix 16
AB7
B
4 21Right-handed alpha
Helix 17
AB8
B
25 43Right-handed alpha
Helix 18
AB9
B
48 76Right-handed alpha
Helix 19
AC1
B
81 85Right-handed 310
Helix 20
AC2
C
5 16Right-handed alpha
Helix 21
AC3
C
18 22Right-handed 310
Helix 22
AC4
C
35 51Right-handed alpha
Helix 23
AC5
C
55 60Right-handed alpha
Helix 24
AC6
C
64 74Right-handed alpha
Helix 25
AC7
D
36 45Right-handed alpha
Helix 26
AC8
D
67 70Right-handed 310
Helix 27
AC9
D
95 110Right-handed alpha
Helix 28
AD1
D
113 118Right-handed alpha
Helix 29
AD2
D
121 130Right-handed alpha
Helix 30
AD3
D
132 134Right-handed 310
Helix 31
AD4
D
135 158Right-handed alpha
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There are 4 sheets in PDB entry 6UXE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 60first strand
Strand 2
A
373 374parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 124first strand
Strand 2
A
266 270anti-parallel
Strand 3
A
251 255anti-parallel
Strand 4
A
228 232parallel
Strand 5
A
197 201parallel
Strand 6
A
148 152parallel
Strand 7
A
172 176parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
340 342first strand
Strand 2
A
353 358anti-parallel
Strand 3
A
405 409anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
59 66first strand
Strand 2
D
71 79anti-parallel
Strand 3
D
85 93anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il