Analysis of interatomic Contacts of Structural Units in PDB entry:
6V00


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6V00 entry

There are 12 chains in PDB entry 6V00 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
THR 104LYS 569
B
THR 6LYS 149
C
ARG 53ARG 99
D
THR 104LYS 569
E
THR 6LYS 149
F
ARG 53ARG 99
G
THR 104LYS 569
H
THR 6LYS 149
I
ARG 53ARG 99
J
THR 104LYS 569
K
THR 6LYS 149
L
ARG 53ARG 99
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are120 helices in PDB entry 6V00. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
104 115Right-handed alpha
Helix 2
AA2
A
120 142Right-handed alpha
Helix 3
AA3
A
143 145Right-handed 310
Helix 4
AA4
A
148 152Right-handed 310
Helix 5
AA5
A
159 178Right-handed alpha
Helix 6
AA6
A
185 194Right-handed alpha
Helix 7
AA7
A
196 216Right-handed alpha
Helix 8
AA8
A
223 237Right-handed alpha
Helix 9
AA9
A
238 241Right-handed 310
Helix 10
AB1
A
242 244Right-handed 310
Helix 11
AB2
A
245 258Right-handed alpha
Helix 12
AB3
A
258 284Right-handed alpha
Helix 13
AB4
A
298 311Right-handed alpha
Helix 14
AB5
A
322 358Right-handed alpha
Helix 15
AB6
A
363 366Right-handed 310
Helix 16
AB7
A
367 385Right-handed alpha
Helix 17
AB8
A
390 394Right-handed 310
Helix 18
AB9
A
509 532Right-handed alpha
Helix 19
AC1
A
537 564Right-handed alpha
Helix 20
AC2
B
7 22Right-handed alpha
Helix 21
AC3
B
29 40Right-handed alpha
Helix 22
AC4
B
45 54Right-handed alpha
Helix 23
AC5
B
65 75Right-handed alpha
Helix 24
AC6
B
80 91Right-handed alpha
Helix 25
AC7
B
92 98Right-handed 310
Helix 26
AC8
B
103 111Right-handed alpha
Helix 27
AC9
B
118 129Right-handed alpha
Helix 28
AD1
B
139 149Right-handed alpha
Helix 29
AD2
C
56 81Right-handed alpha
Helix 30
AD3
C
90 99Right-handed alpha
Helix 31
AD4
D
105 115Right-handed alpha
Helix 32
AD5
D
120 142Right-handed alpha
Helix 33
AD6
D
143 145Right-handed 310
Helix 34
AD7
D
148 152Right-handed 310
Helix 35
AD8
D
159 178Right-handed alpha
Helix 36
AD9
D
185 194Right-handed alpha
Helix 37
AE1
D
196 216Right-handed alpha
Helix 38
AE2
D
223 237Right-handed alpha
Helix 39
AE3
D
238 241Right-handed 310
Helix 40
AE4
D
242 244Right-handed 310
Helix 41
AE5
D
245 258Right-handed alpha
Helix 42
AE6
D
258 284Right-handed alpha
Helix 43
AE7
D
298 311Right-handed alpha
Helix 44
AE8
D
322 358Right-handed alpha
Helix 45
AE9
D
363 366Right-handed 310
Helix 46
AF1
D
367 385Right-handed alpha
Helix 47
AF2
D
390 394Right-handed 310
Helix 48
AF3
D
509 532Right-handed alpha
Helix 49
AF4
D
537 564Right-handed alpha
Helix 50
AF5
E
7 22Right-handed alpha
Helix 51
AF6
E
29 40Right-handed alpha
Helix 52
AF7
E
45 54Right-handed alpha
Helix 53
AF8
E
65 75Right-handed alpha
Helix 54
AF9
E
80 91Right-handed alpha
Helix 55
AG1
E
92 98Right-handed 310
Helix 56
AG2
E
103 111Right-handed alpha
Helix 57
AG3
E
118 129Right-handed alpha
Helix 58
AG4
E
139 149Right-handed alpha
Helix 59
AG5
F
56 81Right-handed alpha
Helix 60
AG6
F
90 99Right-handed alpha
Helix 61
AG7
G
105 115Right-handed alpha
Helix 62
AG8
G
120 142Right-handed alpha
Helix 63
AG9
G
143 145Right-handed 310
Helix 64
AH1
G
148 152Right-handed 310
Helix 65
AH2
G
159 178Right-handed alpha
Helix 66
AH3
G
185 194Right-handed alpha
Helix 67
AH4
G
196 216Right-handed alpha
Helix 68
AH5
G
223 237Right-handed alpha
Helix 69
AH6
G
238 241Right-handed 310
Helix 70
AH7
G
242 244Right-handed 310
Helix 71
AH8
G
245 258Right-handed alpha
Helix 72
AH9
G
258 284Right-handed alpha
Helix 73
AI1
G
298 311Right-handed alpha
Helix 74
AI2
G
322 358Right-handed alpha
Helix 75
AI3
G
363 366Right-handed 310
Helix 76
AI4
G
367 385Right-handed alpha
Helix 77
AI5
G
390 394Right-handed 310
Helix 78
AI6
G
509 532Right-handed alpha
Helix 79
AI7
G
537 564Right-handed alpha
Helix 80
AI8
H
7 22Right-handed alpha
Helix 81
AI9
H
29 40Right-handed alpha
Helix 82
AJ1
H
45 54Right-handed alpha
Helix 83
AJ2
H
65 75Right-handed alpha
Helix 84
AJ3
H
80 91Right-handed alpha
Helix 85
AJ4
H
92 98Right-handed 310
Helix 86
AJ5
H
103 111Right-handed alpha
Helix 87
AJ6
H
118 129Right-handed alpha
Helix 88
AJ7
H
139 149Right-handed alpha
Helix 89
AJ8
I
56 81Right-handed alpha
Helix 90
AJ9
I
90 99Right-handed alpha
Helix 91
AK1
J
105 115Right-handed alpha
Helix 92
AK2
J
120 142Right-handed alpha
Helix 93
AK3
J
143 145Right-handed 310
Helix 94
AK4
J
148 152Right-handed 310
Helix 95
AK5
J
159 178Right-handed alpha
Helix 96
AK6
J
185 194Right-handed alpha
Helix 97
AK7
J
196 216Right-handed alpha
Helix 98
AK8
J
223 237Right-handed alpha
Helix 99
AK9
J
238 241Right-handed 310
Helix 100
AL1
J
242 244Right-handed 310
Helix 101
AL2
J
245 258Right-handed alpha
Helix 102
AL3
J
258 284Right-handed alpha
Helix 103
AL4
J
298 311Right-handed alpha
Helix 104
AL5
J
322 358Right-handed alpha
Helix 105
AL6
J
363 366Right-handed 310
Helix 106
AL7
J
367 385Right-handed alpha
Helix 107
AL8
J
390 394Right-handed 310
Helix 108
AL9
J
509 532Right-handed alpha
Helix 109
AM1
J
537 564Right-handed alpha
Helix 110
AM2
K
7 22Right-handed alpha
Helix 111
AM3
K
29 40Right-handed alpha
Helix 112
AM4
K
45 54Right-handed alpha
Helix 113
AM5
K
65 75Right-handed alpha
Helix 114
AM6
K
80 91Right-handed alpha
Helix 115
AM7
K
92 98Right-handed 310
Helix 116
AM8
K
103 111Right-handed alpha
Helix 117
AM9
K
118 129Right-handed alpha
Helix 118
AN1
K
139 149Right-handed alpha
Helix 119
AN2
L
56 81Right-handed alpha
Helix 120
AN3
L
90 99Right-handed alpha
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There are 4 sheets in PDB entry 6V00. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
100 102first strand
Strand 2
B
136 138anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
100 102first strand
Strand 2
E
136 138anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
100 102first strand
Strand 2
H
136 138anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
100 102first strand
Strand 2
K
136 138anti-parallel
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