Analysis of interatomic Contacts of Structural Units in PDB entry:
6V0V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6V0V entry

There are 4 chains in PDB entry 6V0V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 461	ALA 1008
B	MET 1	SER 351
F	G 17	C 46
I	G 1	C 30

There are 26 helices in PDB entry 6V0V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	463	474	Right-handed alpha
Helix 2	AA2	A	479	493	Right-handed alpha
Helix 3	AA3	A	499	511	Right-handed alpha
Helix 4	AA4	A	559	570	Right-handed alpha
Helix 5	AA5	A	570	581	Right-handed alpha
Helix 6	AA6	A	664	682	Right-handed alpha
Helix 7	AA7	A	708	716	Right-handed alpha
Helix 8	AA8	A	733	738	Right-handed alpha
Helix 9	AA9	A	750	763	Right-handed alpha
Helix 10	AB1	A	768	776	Right-handed alpha
Helix 11	AB2	A	793	814	Right-handed alpha
Helix 12	AB3	A	824	841	Right-handed alpha
Helix 13	AB4	A	850	858	Right-handed alpha
Helix 14	AB5	A	859	870	Right-handed alpha
Helix 15	AB6	A	873	890	Right-handed alpha
Helix 16	AB7	A	890	895	Right-handed alpha
Helix 17	AB8	A	897	902	Right-handed alpha
Helix 18	AB9	A	904	924	Right-handed alpha
Helix 19	AC1	A	933	942	Right-handed alpha
Helix 20	AC2	A	942	950	Right-handed alpha
Helix 21	AC3	A	958	964	Right-handed alpha
Helix 22	AC4	A	964	975	Right-handed alpha
Helix 23	AC5	A	982	995	Right-handed alpha
Helix 24	AC6	A	996	1001	Right-handed alpha
Helix 25	AC7	A	1002	1005	Right-handed 310
Helix 26	AC8	B	11	15	Right-handed 310

There are 9 sheets in PDB entry 6V0V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	518	520	first strand
Strand 2	A	686	690	anti-parallel
Strand 3	A	695	706	anti-parallel
Strand 4	A	590	601	parallel
Strand 5	A	620	633	anti-parallel
Strand 6	A	653	658	anti-parallel
Strand 7	A	554	556	anti-parallel
Strand 8	A	535	536	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	518	520	first strand
Strand 2	A	686	690	anti-parallel
Strand 3	A	695	706	anti-parallel
Strand 4	A	590	601	parallel
Strand 5	A	620	633	anti-parallel
Strand 6	A	636	642	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	6	first strand
Strand 2	B	344	349	anti-parallel
Strand 3	B	326	331	anti-parallel
Strand 4	B	318	321	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	24	first strand
Strand 2	B	27	31	anti-parallel
Strand 3	B	45	51	anti-parallel
Strand 4	B	54	59	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	62	first strand
Strand 2	B	119	127	parallel
Strand 3	B	107	116	anti-parallel
Strand 4	B	90	95	anti-parallel
Strand 5	B	75	80	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	131	first strand
Strand 2	B	191	196	parallel
Strand 3	B	181	186	anti-parallel
Strand 4	B	150	156	anti-parallel
Strand 5	B	141	147	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	161	first strand
Strand 2	B	175	177	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	212	first strand
Strand 2	B	215	219	anti-parallel
Strand 3	B	233	239	anti-parallel
Strand 4	B	246	252	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	262	267	first strand
Strand 2	B	270	274	anti-parallel
Strand 3	B	288	291	anti-parallel
Strand 4	B	298	301	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6V0V

Analysis of interatomic Contacts of Structural Units in PDB entry:
6V0V