Analysis of interatomic Contacts of Structural Units in PDB entry:
6V9V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6V9V entry

There are 4 chains in PDB entry 6V9V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 447	GLU 1079
B	LYS 447	GLU 1079
D	LYS 447	GLU 1079
C	LYS 447	GLU 1079

There are124 helices in PDB entry 6V9V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	447	456	Right-handed alpha
Helix 2	AA2	A	458	467	Right-handed alpha
Helix 3	AA3	A	484	492	Right-handed alpha
Helix 4	AA4	A	494	505	Right-handed alpha
Helix 5	AA5	A	516	523	Right-handed alpha
Helix 6	AA6	A	526	534	Right-handed alpha
Helix 7	AA7	A	550	558	Right-handed alpha
Helix 8	AA8	A	560	570	Right-handed alpha
Helix 9	AA9	A	582	590	Right-handed alpha
Helix 10	AB1	A	592	602	Right-handed alpha
Helix 11	AB2	A	604	610	Right-handed alpha
Helix 12	AB3	A	621	629	Right-handed alpha
Helix 13	AB4	A	630	641	Right-handed alpha
Helix 14	AB5	A	683	692	Right-handed alpha
Helix 15	AB6	A	694	699	Right-handed alpha
Helix 16	AB7	A	700	714	Right-handed alpha
Helix 17	AB8	A	714	740	Right-handed alpha
Helix 18	AB9	A	766	795	Right-handed alpha
Helix 19	AC1	A	803	819	Right-handed alpha
Helix 20	AC2	A	820	823	Right-handed 310
Helix 21	AC3	A	827	850	Right-handed alpha
Helix 22	AC4	A	856	872	Right-handed alpha
Helix 23	AC5	A	873	892	Right-handed alpha
Helix 24	AC6	A	900	911	Right-handed alpha
Helix 25	AC7	A	912	914	Right-handed 310
Helix 26	AC8	A	922	928	Right-handed alpha
Helix 27	AC9	A	933	948	Right-handed alpha
Helix 28	AD1	A	950	970	Right-handed alpha
Helix 29	AD2	A	970	990	Right-handed alpha
Helix 30	AD3	A	991	999	Right-handed alpha
Helix 31	AD4	A	1040	1071	Right-handed alpha
Helix 32	AD5	B	448	456	Right-handed alpha
Helix 33	AD6	B	458	467	Right-handed alpha
Helix 34	AD7	B	484	492	Right-handed alpha
Helix 35	AD8	B	494	505	Right-handed alpha
Helix 36	AD9	B	516	523	Right-handed alpha
Helix 37	AE1	B	526	534	Right-handed alpha
Helix 38	AE2	B	550	558	Right-handed alpha
Helix 39	AE3	B	560	570	Right-handed alpha
Helix 40	AE4	B	582	590	Right-handed alpha
Helix 41	AE5	B	592	602	Right-handed alpha
Helix 42	AE6	B	604	610	Right-handed alpha
Helix 43	AE7	B	621	629	Right-handed alpha
Helix 44	AE8	B	630	641	Right-handed alpha
Helix 45	AE9	B	683	692	Right-handed alpha
Helix 46	AF1	B	694	699	Right-handed alpha
Helix 47	AF2	B	700	714	Right-handed alpha
Helix 48	AF3	B	714	740	Right-handed alpha
Helix 49	AF4	B	766	795	Right-handed alpha
Helix 50	AF5	B	803	819	Right-handed alpha
Helix 51	AF6	B	820	823	Right-handed 310
Helix 52	AF7	B	827	850	Right-handed alpha
Helix 53	AF8	B	856	872	Right-handed alpha
Helix 54	AF9	B	873	892	Right-handed alpha
Helix 55	AG1	B	900	911	Right-handed alpha
Helix 56	AG2	B	912	914	Right-handed 310
Helix 57	AG3	B	922	928	Right-handed alpha
Helix 58	AG4	B	933	948	Right-handed alpha
Helix 59	AG5	B	950	970	Right-handed alpha
Helix 60	AG6	B	970	990	Right-handed alpha
Helix 61	AG7	B	991	999	Right-handed alpha
Helix 62	AG8	B	1040	1071	Right-handed alpha
Helix 63	AG9	D	448	456	Right-handed alpha
Helix 64	AH1	D	458	467	Right-handed alpha
Helix 65	AH2	D	484	492	Right-handed alpha
Helix 66	AH3	D	494	505	Right-handed alpha
Helix 67	AH4	D	516	523	Right-handed alpha
Helix 68	AH5	D	526	534	Right-handed alpha
Helix 69	AH6	D	550	558	Right-handed alpha
Helix 70	AH7	D	560	570	Right-handed alpha
Helix 71	AH8	D	582	590	Right-handed alpha
Helix 72	AH9	D	592	602	Right-handed alpha
Helix 73	AI1	D	604	610	Right-handed alpha
Helix 74	AI2	D	621	629	Right-handed alpha
Helix 75	AI3	D	630	641	Right-handed alpha
Helix 76	AI4	D	683	692	Right-handed alpha
Helix 77	AI5	D	694	699	Right-handed alpha
Helix 78	AI6	D	700	714	Right-handed alpha
Helix 79	AI7	D	714	740	Right-handed alpha
Helix 80	AI8	D	766	795	Right-handed alpha
Helix 81	AI9	D	803	819	Right-handed alpha
Helix 82	AJ1	D	820	823	Right-handed 310
Helix 83	AJ2	D	827	850	Right-handed alpha
Helix 84	AJ3	D	856	872	Right-handed alpha
Helix 85	AJ4	D	873	892	Right-handed alpha
Helix 86	AJ5	D	900	911	Right-handed alpha
Helix 87	AJ6	D	912	914	Right-handed 310
Helix 88	AJ7	D	922	928	Right-handed alpha
Helix 89	AJ8	D	933	948	Right-handed alpha
Helix 90	AJ9	D	950	970	Right-handed alpha
Helix 91	AK1	D	970	990	Right-handed alpha
Helix 92	AK2	D	991	999	Right-handed alpha
Helix 93	AK3	D	1040	1071	Right-handed alpha
Helix 94	AK4	C	448	456	Right-handed alpha
Helix 95	AK5	C	458	467	Right-handed alpha
Helix 96	AK6	C	484	492	Right-handed alpha
Helix 97	AK7	C	494	505	Right-handed alpha
Helix 98	AK8	C	516	523	Right-handed alpha
Helix 99	AK9	C	526	534	Right-handed alpha
Helix 100	AL1	C	550	558	Right-handed alpha
Helix 101	AL2	C	560	570	Right-handed alpha
Helix 102	AL3	C	582	590	Right-handed alpha
Helix 103	AL4	C	592	602	Right-handed alpha
Helix 104	AL5	C	604	610	Right-handed alpha
Helix 105	AL6	C	621	629	Right-handed alpha
Helix 106	AL7	C	630	641	Right-handed alpha
Helix 107	AL8	C	683	692	Right-handed alpha
Helix 108	AL9	C	694	699	Right-handed alpha
Helix 109	AM1	C	700	714	Right-handed alpha
Helix 110	AM2	C	714	740	Right-handed alpha
Helix 111	AM3	C	766	795	Right-handed alpha
Helix 112	AM4	C	803	819	Right-handed alpha
Helix 113	AM5	C	820	823	Right-handed 310
Helix 114	AM6	C	827	850	Right-handed alpha
Helix 115	AM7	C	856	872	Right-handed alpha
Helix 116	AM8	C	873	892	Right-handed alpha
Helix 117	AM9	C	900	911	Right-handed alpha
Helix 118	AN1	C	912	914	Right-handed 310
Helix 119	AN2	C	922	928	Right-handed alpha
Helix 120	AN3	C	933	948	Right-handed alpha
Helix 121	AN4	C	950	970	Right-handed alpha
Helix 122	AN5	C	970	990	Right-handed alpha
Helix 123	AN6	C	991	999	Right-handed alpha
Helix 124	AN7	C	1040	1071	Right-handed alpha

There are 8 sheets in PDB entry 6V9V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	642	643	first strand
Strand 2	A	656	659	anti-parallel
Strand 3	A	1002	1005	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	746	747	first strand
Strand 2	A	750	751	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	642	643	first strand
Strand 2	B	656	659	anti-parallel
Strand 3	B	1002	1005	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	746	747	first strand
Strand 2	B	750	751	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	642	643	first strand
Strand 2	D	656	659	anti-parallel
Strand 3	D	1002	1005	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	746	747	first strand
Strand 2	D	750	751	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	642	643	first strand
Strand 2	C	656	659	anti-parallel
Strand 3	C	1002	1005	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	746	747	first strand
Strand 2	C	750	751	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6V9V

Analysis of interatomic Contacts of Structural Units in PDB entry:
6V9V