Analysis of interatomic Contacts of Structural Units in PDB entry:
6VCD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VCD entry

There are 3 chains in PDB entry 6VCD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 10SER 963
B
 ILE 205GLU 691
C
 PRO 2CYS 160
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 6VCD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 32Right-handed 310
Helix 2
AA2
A
41 52Right-handed alpha
Helix 3
AA3
A
62 67Right-handed alpha
Helix 4
AA4
A
92 108Right-handed alpha
Helix 5
AA5
A
215 225Right-handed alpha
Helix 6
AA6
A
225 239Right-handed alpha
Helix 7
AA7
A
254 260Right-handed alpha
Helix 8
AA8
A
282 290Right-handed 310
Helix 9
AA9
A
297 305Right-handed alpha
Helix 10
AB1
A
331 347Right-handed alpha
Helix 11
AB2
A
359 363Right-handed 310
Helix 12
AB3
A
364 373Right-handed alpha
Helix 13
AB4
A
388 399Right-handed alpha
Helix 14
AB5
A
401 415Right-handed alpha
Helix 15
AB6
A
439 441Right-handed 310
Helix 16
AB7
A
669 673Right-handed alpha
Helix 17
AB8
A
673 678Right-handed alpha
Helix 18
AB9
A
678 689Right-handed alpha
Helix 19
AC1
A
751 756Right-handed alpha
Helix 20
AC2
A
765 774Right-handed alpha
Helix 21
AC3
A
790 796Right-handed alpha
Helix 22
AC4
A
827 837Right-handed alpha
Helix 23
AC5
A
859 866Right-handed alpha
Helix 24
AC6
A
876 885Right-handed alpha
Helix 25
AC7
A
898 902Right-handed 310
Helix 26
AC8
A
942 951Right-handed alpha
Helix 27
AC9
A
953 962Right-handed alpha
Helix 28
AD1
B
209 217Right-handed alpha
Helix 29
AD2
B
221 228Right-handed alpha
Helix 30
AD3
B
229 231Right-handed 310
Helix 31
AD4
B
232 239Right-handed alpha
Helix 32
AD5
B
249 254Right-handed alpha
Helix 33
AD6
B
312 320Right-handed alpha
Helix 34
AD7
B
324 329Right-handed alpha
Helix 35
AD8
B
345 350Right-handed alpha
Helix 36
AD9
B
399 405Right-handed alpha
Helix 37
AE1
B
612 618Right-handed alpha
Helix 38
AE2
B
640 649Right-handed alpha
Helix 39
AE3
C
17 23Right-handed alpha
Helix 40
AE4
C
24 31Right-handed alpha
Helix 41
AE5
C
51 65Right-handed alpha
Helix 42
AE6
C
86 93Right-handed alpha
Helix 43
AE7
C
96 111Right-handed alpha
Helix 44
AE8
C
112 126Right-handed alpha
Helix 45
AE9
C
131 140Right-handed alpha
Helix 46
AF1
C
146 157Right-handed alpha
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There are 11 sheets in PDB entry 6VCD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 16first strand
Strand 2
A
24 26anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 80first strand
Strand 2
A
310 313anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 87first strand
Strand 2
A
122 125parallel
Strand 3
A
243 245parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
264 266first strand
Strand 2
A
271 273anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
355 356first strand
Strand 2
A
320 323parallel
Strand 3
A
434 437parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
841 844first strand
Strand 2
A
740 745parallel
Strand 3
A
909 910anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
815 817first strand
Strand 2
A
824 826anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
869 872first strand
Strand 2
A
889 893parallel
Strand 3
A
934 938anti-parallel
Strand 4
A
922 926anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
247 248first strand
Strand 2
B
334 336parallel
Strand 3
B
360 362parallel
Strand 4
B
387 389parallel
Strand 5
B
602 603parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
631 632first strand
Strand 2
B
659 660parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
13 16first strand
Strand 2
C
4 7anti-parallel
Strand 3
C
44 46parallel
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