Analysis of interatomic Contacts of Structural Units in PDB entry:
6VOY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VOY entry

There are 12 chains in PDB entry 6VOY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
PRO 0ALA 275
B
SER 1ALA 274
C
PRO 0ALA 275
D
SER 1ALA 274
E
ILE 30PRO 372
F
ILE 30PRO 372
I
C 1 T 47
J
A 1 G 25
K
A 1 G 18
L
C 1 T 47
M
A 1 G 25
N
A 1 G 18
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 90 helices in PDB entry 6VOY. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
5 10Right-handed alpha
Helix 2
AA2
A
12 20Right-handed alpha
Helix 3
AA3
A
24 30Right-handed alpha
Helix 4
AA4
A
33 40Right-handed alpha
Helix 5
AA5
A
96 108Right-handed alpha
Helix 6
AA6
A
122 127Right-handed alpha
Helix 7
AA7
A
127 136Right-handed alpha
Helix 8
AA8
A
148 151Right-handed 310
Helix 9
AA9
A
152 172Right-handed alpha
Helix 10
AB1
A
179 191Right-handed alpha
Helix 11
AB2
A
201 208Right-handed alpha
Helix 12
AB3
A
209 212Right-handed 310
Helix 13
AB4
A
267 269Right-handed 310
Helix 14
AB5
B
2 10Right-handed alpha
Helix 15
AB6
B
16 20Right-handed 310
Helix 16
AB7
B
22 31Right-handed alpha
Helix 17
AB8
B
96 110Right-handed alpha
Helix 18
AB9
B
122 127Right-handed alpha
Helix 19
AC1
B
127 135Right-handed alpha
Helix 20
AC2
B
136 138Right-handed 310
Helix 21
AC3
B
148 150Right-handed 310
Helix 22
AC4
B
151 171Right-handed alpha
Helix 23
AC5
B
179 190Right-handed alpha
Helix 24
AC6
B
201 207Right-handed alpha
Helix 25
AC7
C
2 10Right-handed alpha
Helix 26
AC8
C
12 20Right-handed alpha
Helix 27
AC9
C
22 30Right-handed alpha
Helix 28
AD1
C
33 39Right-handed alpha
Helix 29
AD2
C
96 108Right-handed alpha
Helix 30
AD3
C
122 127Right-handed alpha
Helix 31
AD4
C
127 136Right-handed alpha
Helix 32
AD5
C
148 151Right-handed 310
Helix 33
AD6
C
152 172Right-handed alpha
Helix 34
AD7
C
177 192Right-handed alpha
Helix 35
AD8
C
201 208Right-handed alpha
Helix 36
AD9
C
209 212Right-handed 310
Helix 37
AE1
C
267 271Right-handed 310
Helix 38
AE2
D
2 10Right-handed alpha
Helix 39
AE3
D
16 20Right-handed 310
Helix 40
AE4
D
22 32Right-handed alpha
Helix 41
AE5
D
96 110Right-handed alpha
Helix 42
AE6
D
122 126Right-handed 310
Helix 43
AE7
D
127 135Right-handed alpha
Helix 44
AE8
D
136 138Right-handed 310
Helix 45
AE9
D
148 150Right-handed 310
Helix 46
AF1
D
151 171Right-handed alpha
Helix 47
AF2
D
179 190Right-handed alpha
Helix 48
AF3
D
201 206Right-handed alpha
Helix 49
AF4
E
38 48Right-handed alpha
Helix 50
AF5
E
63 83Right-handed alpha
Helix 51
AF6
E
88 90Right-handed 310
Helix 52
AF7
E
91 104Right-handed alpha
Helix 53
AF8
E
130 146Right-handed alpha
Helix 54
AF9
E
151 156Right-handed alpha
Helix 55
AG1
E
160 169Right-handed alpha
Helix 56
AG2
E
170 173Right-handed 310
Helix 57
AG3
E
175 193Right-handed alpha
Helix 58
AG4
E
194 213Right-handed alpha
Helix 59
AG5
E
221 234Right-handed alpha
Helix 60
AG6
E
241 251Right-handed alpha
Helix 61
AG7
E
252 257Right-handed 310
Helix 62
AG8
E
259 262Right-handed 310
Helix 63
AG9
E
263 276Right-handed alpha
Helix 64
AH1
E
277 286Right-handed 310
Helix 65
AH2
E
287 292Right-handed alpha
Helix 66
AH3
E
298 310Right-handed alpha
Helix 67
AH4
E
320 332Right-handed alpha
Helix 68
AH5
E
341 346Right-handed alpha
Helix 69
AH6
E
353 360Right-handed alpha
Helix 70
AH7
F
38 48Right-handed alpha
Helix 71
AH8
F
63 83Right-handed alpha
Helix 72
AH9
F
88 90Right-handed 310
Helix 73
AI1
F
91 104Right-handed alpha
Helix 74
AI2
F
130 146Right-handed alpha
Helix 75
AI3
F
151 156Right-handed alpha
Helix 76
AI4
F
160 169Right-handed alpha
Helix 77
AI5
F
170 173Right-handed 310
Helix 78
AI6
F
175 193Right-handed alpha
Helix 79
AI7
F
194 213Right-handed alpha
Helix 80
AI8
F
221 234Right-handed alpha
Helix 81
AI9
F
241 251Right-handed alpha
Helix 82
AJ1
F
252 257Right-handed 310
Helix 83
AJ2
F
259 262Right-handed 310
Helix 84
AJ3
F
263 276Right-handed alpha
Helix 85
AJ4
F
277 286Right-handed 310
Helix 86
AJ5
F
287 292Right-handed alpha
Helix 87
AJ6
F
298 310Right-handed alpha
Helix 88
AJ7
F
320 332Right-handed alpha
Helix 89
AJ8
F
341 346Right-handed alpha
Helix 90
AJ9
F
353 360Right-handed alpha
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There are 8 sheets in PDB entry 6VOY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
62 65first strand
Strand 2
A
75 80anti-parallel
Strand 3
A
87 92anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
228 230first strand
Strand 2
A
271 273anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
254 258first strand
Strand 2
A
262 266anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
62 65first strand
Strand 2
B
76 80anti-parallel
Strand 3
B
87 90anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
228 230first strand
Strand 2
B
241 244anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
61 66first strand
Strand 2
C
75 80anti-parallel
Strand 3
C
87 92anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
62 65first strand
Strand 2
D
75 80anti-parallel
Strand 3
D
87 92anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
116 117first strand
Strand 2
D
140 141parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il