Analysis of interatomic Contacts of Structural Units in PDB entry:
6VVQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VVQ entry

There are 4 chains in PDB entry 6VVQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 346	ARG 584
B	ARG 350	ARG 584
C	GLY 345	ASP 586
D	ALA 352	ARG 584

There are 29 helices in PDB entry 6VVQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	346	365	Right-handed alpha
Helix 2	AA2	A	380	382	Right-handed 310
Helix 3	AA3	A	383	401	Right-handed alpha
Helix 4	AA4	A	435	444	Right-handed alpha
Helix 5	AA5	A	445	449	Right-handed 310
Helix 6	AA6	A	551	553	Right-handed 310
Helix 7	AA7	A	554	563	Right-handed alpha
Helix 8	AA8	A	567	582	Right-handed alpha
Helix 9	AA9	B	351	365	Right-handed alpha
Helix 10	AB1	B	383	401	Right-handed alpha
Helix 11	AB2	B	435	444	Right-handed alpha
Helix 12	AB3	B	445	449	Right-handed 310
Helix 13	AB4	B	551	553	Right-handed 310
Helix 14	AB5	B	554	563	Right-handed alpha
Helix 15	AB6	B	567	583	Right-handed alpha
Helix 16	AB7	C	346	364	Right-handed alpha
Helix 17	AB8	C	383	401	Right-handed alpha
Helix 18	AB9	C	435	444	Right-handed alpha
Helix 19	AC1	C	445	452	Right-handed 310
Helix 20	AC2	C	551	553	Right-handed 310
Helix 21	AC3	C	554	563	Right-handed alpha
Helix 22	AC4	C	567	584	Right-handed alpha
Helix 23	AC5	D	353	365	Right-handed alpha
Helix 24	AC6	D	383	400	Right-handed alpha
Helix 25	AC7	D	435	444	Right-handed alpha
Helix 26	AC8	D	445	449	Right-handed 310
Helix 27	AC9	D	551	553	Right-handed 310
Helix 28	AD1	D	554	564	Right-handed alpha
Helix 29	AD2	D	567	583	Right-handed alpha

There are 8 sheets in PDB entry 6VVQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	377	378	first strand
Strand 2	A	504	512	parallel
Strand 3	A	486	495	anti-parallel
Strand 4	A	469	476	anti-parallel
Strand 5	A	458	463	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	405	410	first strand
Strand 2	A	413	419	anti-parallel
Strand 3	A	424	432	anti-parallel
Strand 4	A	541	548	anti-parallel
Strand 5	A	530	538	anti-parallel
Strand 6	A	504	512	anti-parallel
Strand 7	A	486	495	anti-parallel
Strand 8	A	523	524	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	377	378	first strand
Strand 2	B	504	512	parallel
Strand 3	B	486	495	anti-parallel
Strand 4	B	469	476	anti-parallel
Strand 5	B	458	466	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	405	410	first strand
Strand 2	B	413	419	anti-parallel
Strand 3	B	424	432	anti-parallel
Strand 4	B	541	548	anti-parallel
Strand 5	B	530	538	anti-parallel
Strand 6	B	504	512	anti-parallel
Strand 7	B	486	495	anti-parallel
Strand 8	B	523	524	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	377	378	first strand
Strand 2	C	504	512	parallel
Strand 3	C	486	495	anti-parallel
Strand 4	C	469	476	anti-parallel
Strand 5	C	458	466	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	405	410	first strand
Strand 2	C	413	419	anti-parallel
Strand 3	C	424	432	anti-parallel
Strand 4	C	541	548	anti-parallel
Strand 5	C	530	538	anti-parallel
Strand 6	C	504	512	anti-parallel
Strand 7	C	486	495	anti-parallel
Strand 8	C	523	524	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	377	378	first strand
Strand 2	D	504	512	parallel
Strand 3	D	486	495	anti-parallel
Strand 4	D	469	476	anti-parallel
Strand 5	D	458	466	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	405	410	first strand
Strand 2	D	413	419	anti-parallel
Strand 3	D	424	432	anti-parallel
Strand 4	D	541	548	anti-parallel
Strand 5	D	530	538	anti-parallel
Strand 6	D	504	512	anti-parallel
Strand 7	D	486	495	anti-parallel
Strand 8	D	523	524	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VVQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VVQ