Analysis of interatomic Contacts of Structural Units in PDB entry:
6VVV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VVV entry

There are 10 chains in PDB entry 6VVV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
J	PRO 26	GLY 113
A	MET 1	ARG 223
B	LEU 2	PRO 236
C	ASN 21	ARG 1139
D	ASP 3	ALA 1282
E	ALA 25	GLY 106
F	ALA 163	TYR 464
O	G 1	T 31
T	ILE 251	GLN 303
P	A 1	C 26

There are107 helices in PDB entry 6VVV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	J	80	87	Right-handed alpha
Helix 2	AA2	J	90	109	Right-handed alpha
Helix 3	AA3	A	30	46	Right-handed alpha
Helix 4	AA4	A	72	82	Right-handed alpha
Helix 5	AA5	A	203	219	Right-handed alpha
Helix 6	AA6	B	29	45	Right-handed alpha
Helix 7	AA7	B	72	81	Right-handed alpha
Helix 8	AA8	B	203	227	Right-handed alpha
Helix 9	AA9	C	45	57	Right-handed alpha
Helix 10	AB1	C	75	85	Right-handed alpha
Helix 11	AB2	C	109	117	Right-handed alpha
Helix 12	AB3	C	371	397	Right-handed alpha
Helix 13	AB4	C	404	409	Right-handed alpha
Helix 14	AB5	C	411	423	Right-handed alpha
Helix 15	AB6	C	435	443	Right-handed alpha
Helix 16	AB8	C	581	585	Right-handed 310
Helix 17	AB9	C	592	604	Right-handed alpha
Helix 18	AC1	C	621	630	Right-handed alpha
Helix 19	AC2	C	730	735	Right-handed alpha
Helix 20	AC3	C	770	775	Right-handed 310
Helix 21	AC4	C	806	817	Right-handed alpha
Helix 22	AC5	C	919	934	Right-handed alpha
Helix 23	AC6	C	944	948	Right-handed 310
Helix 24	AC7	C	972	982	Right-handed alpha
Helix 25	AC8	C	1027	1032	Right-handed alpha
Helix 26	AC9	C	1060	1071	Right-handed alpha
Helix 27	AD1	C	1072	1082	Right-handed alpha
Helix 28	AD2	C	1088	1100	Right-handed alpha
Helix 29	AD3	C	1109	1122	Right-handed alpha
Helix 30	AD4	D	16	24	Right-handed alpha
Helix 31	AD5	D	84	90	Right-handed 310
Helix 32	AD6	D	103	109	Right-handed alpha
Helix 33	AD7	D	112	119	Right-handed alpha
Helix 34	AD8	D	121	130	Right-handed alpha
Helix 35	AD9	D	140	147	Right-handed alpha
Helix 36	AE1	D	147	187	Right-handed alpha
Helix 37	AE2	D	190	228	Right-handed alpha
Helix 38	AE3	D	239	247	Right-handed alpha
Helix 39	AE4	D	256	267	Right-handed alpha
Helix 40	AE5	D	269	284	Right-handed alpha
Helix 41	AE6	D	286	305	Right-handed alpha
Helix 42	AE7	D	308	311	Right-handed 310
Helix 43	AE8	D	321	325	Right-handed 310
Helix 44	AE9	D	338	361	Right-handed alpha
Helix 45	AF1	D	363	383	Right-handed alpha
Helix 46	AF2	D	393	397	Right-handed 310
Helix 47	AF3	D	401	408	Right-handed alpha
Helix 48	AF4	D	412	419	Right-handed alpha
Helix 49	AF5	D	445	452	Right-handed alpha
Helix 50	AF6	D	452	463	Right-handed alpha
Helix 51	AF7	D	468	478	Right-handed alpha
Helix 52	AF8	D	482	492	Right-handed alpha
Helix 53	AF9	D	505	507	Right-handed 310
Helix 54	AG1	D	525	527	Right-handed 310
Helix 55	AG2	D	528	533	Right-handed alpha
Helix 56	AG3	D	548	558	Right-handed alpha
Helix 57	AG4	D	560	564	Right-handed 310
Helix 58	AG5	D	580	590	Right-handed alpha
Helix 59	AG6	D	614	624	Right-handed alpha
Helix 60	AG7	D	643	651	Right-handed alpha
Helix 61	AG8	D	666	676	Right-handed alpha
Helix 62	AG9	D	688	703	Right-handed alpha
Helix 63	AH1	D	704	725	Right-handed alpha
Helix 64	AH2	D	731	736	Right-handed alpha
Helix 65	AH3	D	738	762	Right-handed alpha
Helix 66	AH4	D	767	792	Right-handed alpha
Helix 67	AH5	D	796	805	Right-handed alpha
Helix 68	AH6	D	867	881	Right-handed alpha
Helix 69	AH7	D	944	954	Right-handed alpha
Helix 70	AH8	D	975	979	Right-handed alpha
Helix 71	AH9	D	993	1008	Right-handed alpha
Helix 72	AI1	D	1028	1037	Right-handed alpha
Helix 73	AI2	D	1118	1127	Right-handed alpha
Helix 74	AI3	D	1127	1146	Right-handed alpha
Helix 75	AI4	D	1151	1161	Right-handed alpha
Helix 76	AI5	D	1210	1217	Right-handed alpha
Helix 77	AI6	D	1220	1228	Right-handed alpha
Helix 78	AI7	D	1229	1241	Right-handed alpha
Helix 79	AI8	D	1248	1256	Right-handed alpha
Helix 80	AI9	D	1261	1265	Right-handed 310
Helix 81	AJ1	D	1276	1282	Right-handed alpha
Helix 82	AJ2	E	30	34	Right-handed 310
Helix 83	AJ3	E	36	42	Right-handed alpha
Helix 84	AJ4	E	46	65	Right-handed alpha
Helix 85	AJ5	E	87	98	Right-handed alpha
Helix 86	AJ6	F	165	174	Right-handed alpha
Helix 87	AJ7	F	180	208	Right-handed alpha
Helix 88	AJ8	F	212	237	Right-handed alpha
Helix 89	AJ9	F	237	246	Right-handed alpha
Helix 90	AK1	F	247	249	Right-handed 310
Helix 91	AK2	F	254	273	Right-handed alpha
Helix 92	AK3	F	274	278	Right-handed 310
Helix 93	AK4	F	280	301	Right-handed alpha
Helix 94	AK5	F	307	329	Right-handed alpha
Helix 95	AK6	F	333	342	Right-handed alpha
Helix 96	AK7	F	344	355	Right-handed alpha
Helix 97	AK8	F	373	377	Right-handed 310
Helix 98	AK9	F	384	403	Right-handed alpha
Helix 99	AL1	F	406	418	Right-handed alpha
Helix 100	AL2	F	426	435	Right-handed alpha
Helix 101	AL3	F	437	453	Right-handed alpha
Helix 102	AL4	F	454	464	Right-handed alpha
Helix 103	AL5	T	251	255	Right-handed 310
Helix 104	AL6	T	257	268	Right-handed alpha
Helix 105	AL7	T	271	278	Right-handed alpha
Helix 106	AL8	T	279	284	Right-handed alpha
Helix 107	AL9	T	290	303	Right-handed alpha

There are 37 sheets in PDB entry 6VVV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	39	45	first strand
Strand 2	J	27	34	anti-parallel
Strand 3	J	61	64	anti-parallel
Strand 4	J	53	55	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	10	first strand
Strand 2	A	18	26	anti-parallel
Strand 3	A	190	198	anti-parallel
Strand 4	A	171	178	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	100	first strand
Strand 2	A	133	147	anti-parallel
Strand 3	A	47	56	anti-parallel
Strand 4	A	162	163	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	100	first strand
Strand 2	A	133	147	anti-parallel
Strand 3	A	166	168	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	87	first strand
Strand 2	A	116	118	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	106	first strand
Strand 2	A	124	128	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	15	first strand
Strand 2	B	18	23	anti-parallel
Strand 3	B	190	198	anti-parallel
Strand 4	B	171	180	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	100	first strand
Strand 2	B	133	144	anti-parallel
Strand 3	B	47	56	anti-parallel
Strand 4	B	162	163	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	87	first strand
Strand 2	B	116	118	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	106	first strand
Strand 2	B	124	127	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	147	first strand
Strand 2	B	166	167	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	31	first strand
Strand 2	C	962	964	parallel
Strand 3	C	617	618	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	121	122	first strand
Strand 2	C	148	149	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	159	first strand
Strand 2	C	162	166	anti-parallel
Strand 3	C	428	430	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	369	370	first strand
Strand 2	C	168	170	anti-parallel
Strand 3	C	445	447	parallel
Strand 4	C	488	490	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	496	497	first strand
Strand 2	C	503	504	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	633	634	first strand
Strand 2	C	692	695	anti-parallel
Strand 3	C	678	679	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	658	662	first strand
Strand 2	C	648	653	anti-parallel
Strand 3	C	639	644	anti-parallel
Strand 4	C	686	687	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	699	700	first strand
Strand 2	C	703	704	anti-parallel

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There are 8 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	998	999	first strand
Strand 2	C	1014	1023	anti-parallel
Strand 3	C	875	878	anti-parallel
Strand 4	C	883	890	anti-parallel
Strand 5	C	726	729	parallel
Strand 6	C	906	907	anti-parallel
Strand 7	C	708	713	parallel
Strand 8	C	1014	1023	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	740	751	first strand
Strand 2	C	856	868	anti-parallel
Strand 3	C	836	845	anti-parallel
Strand 4	C	786	787	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	759	760	first strand
Strand 2	C	796	799	anti-parallel
Strand 3	C	823	825	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	792	794	first strand
Strand 2	C	828	829	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	935	936	first strand
Strand 2	C	956	957	anti-parallel

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There are 8 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1033	1035	first strand
Strand 2	D	425	432	anti-parallel
Strand 3	D	540	544	anti-parallel
Strand 4	D	496	499	anti-parallel
Strand 5	D	509	517	anti-parallel
Strand 6	D	440	444	parallel
Strand 7	D	522	524	anti-parallel
Strand 8	D	425	432	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1058	1059	first strand
Strand 2	D	420	421	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	102	first strand
Strand 2	D	313	319	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	234	235	first strand
Strand 2	D	134	139	anti-parallel
Strand 3	D	252	255	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	327	329	first strand
Strand 2	D	335	337	anti-parallel
Strand 3	F	359	360	parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	611	612	first strand
Strand 2	D	634	637	parallel
Strand 3	D	661	664	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	885	887	first strand
Strand 2	D	973	974	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	896	898	first strand
Strand 2	D	959	961	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	928	929	first strand
Strand 2	D	935	937	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1044	1045	first strand
Strand 2	D	1116	1117	parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1076	1078	first strand
Strand 2	D	1064	1069	anti-parallel
Strand 3	D	1052	1057	anti-parallel
Strand 4	D	1105	1106	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1182	1183	first strand
Strand 2	D	1165	1167	anti-parallel
Strand 3	D	1205	1206	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1272	1275	first strand
Strand 2	E	101	104	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VVV

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VVV