Analysis of interatomic Contacts of Structural Units in PDB entry:
6VW1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VW1 entry

There are 3 chains in PDB entry 6VW1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 19ALA 614
B
 SER 19ALA 614
E
 ASN 334LEU 368
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 81 helices in PDB entry 6VW1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 52Right-handed alpha
Helix 2
AA2
A
55 81Right-handed alpha
Helix 3
AA3
A
82 83Right-handed 310
Helix 4
AA4
A
84 88Right-handed 310
Helix 5
AA5
A
90 102Right-handed alpha
Helix 6
AA6
A
103 108Right-handed 310
Helix 7
AA7
A
109 130Right-handed alpha
Helix 8
AA8
A
146 155Right-handed alpha
Helix 9
AA9
A
157 194Right-handed alpha
Helix 10
AB1
A
198 205Right-handed alpha
Helix 11
AB2
A
206 208Right-handed 310
Helix 12
AB3
A
220 252Right-handed alpha
Helix 13
AB4
A
265 267Right-handed 310
Helix 14
AB5
A
275 277Right-handed 310
Helix 15
AB6
A
278 283Right-handed alpha
Helix 16
AB7
A
293 300Right-handed alpha
Helix 17
AB8
A
303 317Right-handed alpha
Helix 18
AB9
A
324 331Right-handed alpha
Helix 19
AC1
A
365 385Right-handed alpha
Helix 20
AC2
A
389 393Right-handed 310
Helix 21
AC3
A
399 414Right-handed alpha
Helix 22
AC4
A
414 421Right-handed alpha
Helix 23
AC5
A
431 447Right-handed alpha
Helix 24
AC6
A
449 465Right-handed alpha
Helix 25
AC7
A
469 471Right-handed 310
Helix 26
AC8
A
472 486Right-handed alpha
Helix 27
AC9
A
498 502Right-handed 310
Helix 28
AD1
A
503 508Right-handed alpha
Helix 29
AD2
A
512 533Right-handed alpha
Helix 30
AD3
A
538 542Right-handed 310
Helix 31
AD4
A
547 559Right-handed alpha
Helix 32
AD5
A
565 575Right-handed alpha
Helix 33
AD6
A
581 599Right-handed alpha
Helix 34
AD7
B
20 52Right-handed alpha
Helix 35
AD8
B
55 81Right-handed alpha
Helix 36
AD9
B
82 83Right-handed 310
Helix 37
AE1
B
84 88Right-handed 310
Helix 38
AE2
B
90 102Right-handed alpha
Helix 39
AE3
B
103 108Right-handed 310
Helix 40
AE4
B
109 130Right-handed alpha
Helix 41
AE5
B
146 155Right-handed alpha
Helix 42
AE6
B
157 194Right-handed alpha
Helix 43
AE7
B
198 205Right-handed alpha
Helix 44
AE8
B
206 208Right-handed 310
Helix 45
AE9
B
220 252Right-handed alpha
Helix 46
AF1
B
265 267Right-handed 310
Helix 47
AF2
B
275 277Right-handed 310
Helix 48
AF3
B
278 283Right-handed alpha
Helix 49
AF4
B
293 300Right-handed alpha
Helix 50
AF5
B
303 318Right-handed alpha
Helix 51
AF6
B
324 331Right-handed alpha
Helix 52
AF7
B
365 385Right-handed alpha
Helix 53
AF8
B
389 393Right-handed 310
Helix 54
AF9
B
399 414Right-handed alpha
Helix 55
AG1
B
414 421Right-handed alpha
Helix 56
AG2
B
431 447Right-handed alpha
Helix 57
AG3
B
448 465Right-handed alpha
Helix 58
AG4
B
469 471Right-handed 310
Helix 59
AG5
B
472 486Right-handed alpha
Helix 60
AG6
B
498 502Right-handed 310
Helix 61
AG7
B
503 508Right-handed alpha
Helix 62
AG8
B
512 533Right-handed alpha
Helix 63
AG9
B
538 542Right-handed 310
Helix 64
AH1
B
547 559Right-handed alpha
Helix 65
AH2
B
565 575Right-handed alpha
Helix 66
AH3
B
581 599Right-handed alpha
Helix 67
AH4
E
338 343Right-handed alpha
Helix 68
AH5
E
349 353Right-handed 310
Helix 69
AH6
E
365 370Right-handed alpha
Helix 70
AH7
E
405 410Right-handed 310
Helix 71
AH8
E
416 422Right-handed alpha
Helix 72
AH9
E
438 443Right-handed alpha
Helix 73
AI1
E
502 505Right-handed 310
Helix 74
AI2
F
338 343Right-handed alpha
Helix 75
AI3
F
349 353Right-handed 310
Helix 76
AI4
F
365 370Right-handed alpha
Helix 77
AI5
F
385 389Right-handed 310
Helix 78
AI6
F
405 410Right-handed 310
Helix 79
AI7
F
416 422Right-handed alpha
Helix 80
AI8
F
438 443Right-handed alpha
Helix 81
AI9
F
502 505Right-handed 310
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There are 13 sheets in PDB entry 6VW1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 133first strand
Strand 2
A
141 143anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 263first strand
Strand 2
A
487 488parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 352first strand
Strand 2
A
355 359anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 133first strand
Strand 2
B
141 143anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
262 263first strand
Strand 2
B
487 488parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
347 352first strand
Strand 2
B
355 359anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
354 358first strand
Strand 2
E
394 403anti-parallel
Strand 3
E
507 516anti-parallel
Strand 4
E
431 437anti-parallel
Strand 5
E
378 380anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
452 454first strand
Strand 2
E
492 494anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
473 474first strand
Strand 2
E
488 489anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
354 358first strand
Strand 2
F
395 403anti-parallel
Strand 3
F
507 515anti-parallel
Strand 4
F
431 437anti-parallel
Strand 5
F
378 379anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
361 362first strand
Strand 2
F
524 525parallel
Strand 3
F
391 392anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
452 454first strand
Strand 2
F
492 494anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
473 474first strand
Strand 2
F
488 489anti-parallel
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