Analysis of interatomic Contacts of Structural Units in PDB entry:
6VXX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VXX entry

There are 3 chains in PDB entry 6VXX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ALA 27SER 1147
B
ALA 27SER 1147
C
ALA 27SER 1147
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 63 helices in PDB entry 6VXX. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
294 303Right-handed alpha
Helix 2
AA2
A
338 343Right-handed alpha
Helix 3
AA3
A
349 353Right-handed 310
Helix 4
AA4
A
364 371Right-handed alpha
Helix 5
AA5
A
405 410Right-handed 310
Helix 6
AA6
A
737 743Right-handed alpha
Helix 7
AA7
A
746 754Right-handed alpha
Helix 8
AA8
A
755 759Right-handed 310
Helix 9
AA9
A
760 783Right-handed alpha
Helix 10
AB1
A
816 824Right-handed alpha
Helix 11
AB2
A
866 885Right-handed alpha
Helix 12
AB3
A
886 891Right-handed alpha
Helix 13
AB4
A
897 908Right-handed alpha
Helix 14
AB5
A
913 919Right-handed alpha
Helix 15
AB6
A
919 941Right-handed alpha
Helix 16
AB7
A
942 944Right-handed 310
Helix 17
AB8
A
945 965Right-handed alpha
Helix 18
AB9
A
966 968Right-handed 310
Helix 19
AC1
A
976 982Right-handed alpha
Helix 20
AC2
A
985 1033Right-handed alpha
Helix 21
AC3
A
1141 1147Right-handed alpha
Helix 22
AC4
B
294 303Right-handed alpha
Helix 23
AC5
B
338 343Right-handed alpha
Helix 24
AC6
B
349 353Right-handed 310
Helix 25
AC7
B
364 371Right-handed alpha
Helix 26
AC8
B
405 410Right-handed 310
Helix 27
AC9
B
737 743Right-handed alpha
Helix 28
AD1
B
746 754Right-handed alpha
Helix 29
AD2
B
755 759Right-handed 310
Helix 30
AD3
B
760 783Right-handed alpha
Helix 31
AD4
B
816 824Right-handed alpha
Helix 32
AD5
B
866 885Right-handed alpha
Helix 33
AD6
B
886 891Right-handed alpha
Helix 34
AD7
B
897 908Right-handed alpha
Helix 35
AD8
B
913 919Right-handed alpha
Helix 36
AD9
B
919 941Right-handed alpha
Helix 37
AE1
B
942 944Right-handed 310
Helix 38
AE2
B
945 965Right-handed alpha
Helix 39
AE3
B
966 968Right-handed 310
Helix 40
AE4
B
976 982Right-handed alpha
Helix 41
AE5
B
985 1033Right-handed alpha
Helix 42
AE6
B
1141 1147Right-handed alpha
Helix 43
AE7
C
294 303Right-handed alpha
Helix 44
AE8
C
338 343Right-handed alpha
Helix 45
AE9
C
349 353Right-handed 310
Helix 46
AF1
C
364 371Right-handed alpha
Helix 47
AF2
C
405 410Right-handed 310
Helix 48
AF3
C
737 743Right-handed alpha
Helix 49
AF4
C
746 754Right-handed alpha
Helix 50
AF5
C
755 759Right-handed 310
Helix 51
AF6
C
760 783Right-handed alpha
Helix 52
AF7
C
816 824Right-handed alpha
Helix 53
AF8
C
866 885Right-handed alpha
Helix 54
AF9
C
886 891Right-handed alpha
Helix 55
AG1
C
897 908Right-handed alpha
Helix 56
AG2
C
913 919Right-handed alpha
Helix 57
AG3
C
919 941Right-handed alpha
Helix 58
AG4
C
942 944Right-handed 310
Helix 59
AG5
C
945 965Right-handed alpha
Helix 60
AG6
C
966 968Right-handed 310
Helix 61
AG7
C
976 982Right-handed alpha
Helix 62
AG8
C
985 1033Right-handed alpha
Helix 63
AG9
C
1141 1147Right-handed alpha
Back to top of page

There are 45 sheets in PDB entry 6VXX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
28 30first strand
Strand 2
A
61 65anti-parallel
Strand 3
A
265 269anti-parallel
Strand 4
A
90 96anti-parallel
Strand 5
A
188 197anti-parallel
Strand 6
A
200 209anti-parallel
Strand 7
A
224 229anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
42 43first strand
Strand 2
C
565 567parallel
Strand 3
C
573 577anti-parallel
Strand 4
C
584 588anti-parallel
Strand 5
C
546 554anti-parallel
Strand 6
C
538 543anti-parallel
Strand 7
C
325 328parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
47 55first strand
Strand 2
A
271 279anti-parallel
Strand 3
A
285 290anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
83 85first strand
Strand 2
A
237 244anti-parallel
Strand 3
A
141 142parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
83 85first strand
Strand 2
A
237 244anti-parallel
Strand 3
A
101 107anti-parallel
Strand 4
A
117 122anti-parallel
Strand 5
A
125 129anti-parallel
Strand 6
A
169 171anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
311 319first strand
Strand 2
A
592 599anti-parallel
Strand 3
A
609 613anti-parallel
Strand 4
A
648 651anti-parallel
Strand 5
A
642 645anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
325 328first strand
Strand 2
A
538 543parallel
Strand 3
A
546 554anti-parallel
Strand 4
A
584 588anti-parallel
Strand 5
A
573 577anti-parallel
Strand 6
A
565 567anti-parallel
Strand 7
B
42 43parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
354 358first strand
Strand 2
A
394 403anti-parallel
Strand 3
A
507 516anti-parallel
Strand 4
A
431 437anti-parallel
Strand 5
A
376 379anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
361 362first strand
Strand 2
A
524 525parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
448 453first strand
Strand 2
A
493 497anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
654 655first strand
Strand 2
A
691 696parallel
Strand 3
A
670 675anti-parallel
Strand 4
A
664 667anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
701 702first strand
Strand 2
B
787 788parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
711 728first strand
Strand 2
A
1059 1078anti-parallel
Strand 3
A
1047 1056anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
711 728first strand
Strand 2
A
1059 1078anti-parallel
Strand 3
A
1094 1097anti-parallel
Strand 4
A
1102 1105anti-parallel
Strand 5
A
1113 1114anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
733 736first strand
Strand 2
A
858 861anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
787 788first strand
Strand 2
C
701 702parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1120 1125first strand
Strand 2
A
1086 1090anti-parallel
Strand 3
A
1081 1082anti-parallel
Strand 4
A
1133 1134parallel
Back to list of sheets
Back to top of page

There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
28 30first strand
Strand 2
B
61 65anti-parallel
Strand 3
B
265 269anti-parallel
Strand 4
B
90 96anti-parallel
Strand 5
B
188 197anti-parallel
Strand 6
B
200 209anti-parallel
Strand 7
B
224 229anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
47 55first strand
Strand 2
B
271 279anti-parallel
Strand 3
B
285 290anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
83 85first strand
Strand 2
B
237 244anti-parallel
Strand 3
B
141 142parallel
Back to list of sheets
Back to top of page

There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
83 85first strand
Strand 2
B
237 244anti-parallel
Strand 3
B
101 107anti-parallel
Strand 4
B
117 122anti-parallel
Strand 5
B
125 129anti-parallel
Strand 6
B
169 171anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
311 319first strand
Strand 2
B
592 599anti-parallel
Strand 3
B
609 613anti-parallel
Strand 4
B
648 651anti-parallel
Strand 5
B
642 645anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
325 328first strand
Strand 2
B
538 543parallel
Strand 3
B
546 554anti-parallel
Strand 4
B
584 588anti-parallel
Strand 5
B
573 577anti-parallel
Strand 6
B
565 567anti-parallel
Strand 7
C
42 43parallel
Back to list of sheets
Back to top of page

There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
354 358first strand
Strand 2
B
394 403anti-parallel
Strand 3
B
507 516anti-parallel
Strand 4
B
431 437anti-parallel
Strand 5
B
376 379anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
361 362first strand
Strand 2
B
524 525parallel
Back to list of sheets
Back to top of page

There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
448 453first strand
Strand 2
B
493 497anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
654 655first strand
Strand 2
B
691 696parallel
Strand 3
B
670 675anti-parallel
Strand 4
B
664 667anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
701 702first strand
Strand 2
C
787 788parallel
Back to list of sheets
Back to top of page

There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
711 728first strand
Strand 2
B
1059 1078anti-parallel
Strand 3
B
1047 1056anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
711 728first strand
Strand 2
B
1059 1078anti-parallel
Strand 3
B
1094 1097anti-parallel
Strand 4
B
1102 1105anti-parallel
Strand 5
B
1113 1114anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
733 736first strand
Strand 2
B
858 861anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1120 1125first strand
Strand 2
B
1086 1090anti-parallel
Strand 3
B
1081 1082anti-parallel
Strand 4
B
1133 1134parallel
Back to list of sheets
Back to top of page

There are 7 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
28 30first strand
Strand 2
C
61 65anti-parallel
Strand 3
C
265 269anti-parallel
Strand 4
C
90 96anti-parallel
Strand 5
C
188 197anti-parallel
Strand 6
C
200 209anti-parallel
Strand 7
C
224 229anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
47 55first strand
Strand 2
C
271 279anti-parallel
Strand 3
C
285 290anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
83 85first strand
Strand 2
C
237 244anti-parallel
Strand 3
C
141 142parallel
Back to list of sheets
Back to top of page

There are 6 strands in AD9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
83 85first strand
Strand 2
C
237 244anti-parallel
Strand 3
C
101 107anti-parallel
Strand 4
C
117 122anti-parallel
Strand 5
C
125 129anti-parallel
Strand 6
C
169 171anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
311 319first strand
Strand 2
C
592 599anti-parallel
Strand 3
C
609 613anti-parallel
Strand 4
C
648 651anti-parallel
Strand 5
C
642 645anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
354 358first strand
Strand 2
C
394 403anti-parallel
Strand 3
C
507 516anti-parallel
Strand 4
C
431 437anti-parallel
Strand 5
C
376 379anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
361 362first strand
Strand 2
C
524 525parallel
Back to list of sheets
Back to top of page

There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
448 453first strand
Strand 2
C
493 497anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
654 655first strand
Strand 2
C
691 696parallel
Strand 3
C
670 675anti-parallel
Strand 4
C
664 667anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
711 728first strand
Strand 2
C
1059 1078anti-parallel
Strand 3
C
1047 1056anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AE7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
711 728first strand
Strand 2
C
1059 1078anti-parallel
Strand 3
C
1094 1097anti-parallel
Strand 4
C
1102 1105anti-parallel
Strand 5
C
1113 1114anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
733 736first strand
Strand 2
C
858 861anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
1120 1125first strand
Strand 2
C
1086 1090anti-parallel
Strand 3
C
1081 1082anti-parallel
Strand 4
C
1133 1134parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il