Analysis of interatomic Contacts of Structural Units in PDB entry:
6VZ4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6VZ4 entry

There are 14 chains in PDB entry 6VZ4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LYS 38ARG 135
B
ALA 16GLY 102
C
ALA 13LYS 119
D
ARG 34ALA 125
E
ARG 41ARG 135
F
ASP 25GLY 103
G
ALA 13LYS 119
H
ARG 34ALA 125
I
T 2 A 147
J
T 1 A 146
K
ARG 316GLN 1053
L
THR 2ASP 466
M
PRO 3PHE 467
N
MET 1ARG 90
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are110 helices in PDB entry 6VZ4. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
45 58Right-handed alpha
Helix 2
AA2
A
64 78Right-handed alpha
Helix 3
AA3
A
86 115Right-handed alpha
Helix 4
AA4
A
121 133Right-handed alpha
Helix 5
AA5
B
26 30Right-handed 310
Helix 6
AA6
B
31 43Right-handed alpha
Helix 7
AA7
B
50 77Right-handed alpha
Helix 8
AA8
B
83 94Right-handed alpha
Helix 9
AA9
C
17 23Right-handed alpha
Helix 10
AB1
C
27 38Right-handed alpha
Helix 11
AB2
C
47 74Right-handed alpha
Helix 12
AB3
C
80 91Right-handed alpha
Helix 13
AB4
C
91 98Right-handed alpha
Helix 14
AB5
D
38 50Right-handed alpha
Helix 15
AB6
D
56 85Right-handed alpha
Helix 16
AB7
D
91 101Right-handed alpha
Helix 17
AB8
D
104 125Right-handed alpha
Helix 18
AB9
E
45 58Right-handed alpha
Helix 19
AC1
E
64 77Right-handed alpha
Helix 20
AC2
E
86 115Right-handed alpha
Helix 21
AC3
E
121 133Right-handed alpha
Helix 22
AC4
F
31 42Right-handed alpha
Helix 23
AC5
F
50 77Right-handed alpha
Helix 24
AC6
F
83 94Right-handed alpha
Helix 25
AC7
G
17 23Right-handed alpha
Helix 26
AC8
G
27 38Right-handed alpha
Helix 27
AC9
G
47 74Right-handed alpha
Helix 28
AD1
G
80 91Right-handed alpha
Helix 29
AD2
G
91 98Right-handed alpha
Helix 30
AD3
G
113 117Right-handed 310
Helix 31
AD4
H
38 50Right-handed alpha
Helix 32
AD5
H
56 85Right-handed alpha
Helix 33
AD6
H
91 101Right-handed alpha
Helix 34
AD7
H
104 125Right-handed alpha
Helix 35
AD8
K
317 341Right-handed alpha
Helix 36
AD9
K
343 384Right-handed alpha
Helix 37
AE1
K
393 423Right-handed alpha
Helix 38
AE2
K
447 452Right-handed alpha
Helix 39
AE3
K
471 487Right-handed alpha
Helix 40
AE4
K
500 516Right-handed alpha
Helix 41
AE5
K
527 529Right-handed 310
Helix 42
AE6
K
530 542Right-handed alpha
Helix 43
AE7
K
553 564Right-handed alpha
Helix 44
AE8
K
575 582Right-handed alpha
Helix 45
AE9
K
582 587Right-handed alpha
Helix 46
AF1
K
598 603Right-handed 310
Helix 47
AF2
K
607 615Right-handed alpha
Helix 48
AF3
K
634 645Right-handed alpha
Helix 49
AF4
K
654 659Right-handed alpha
Helix 50
AF5
K
679 691Right-handed alpha
Helix 51
AF6
K
698 703Right-handed alpha
Helix 52
AF7
K
719 733Right-handed alpha
Helix 53
AF8
K
754 765Right-handed alpha
Helix 54
AF9
K
766 768Right-handed 310
Helix 55
AG1
K
769 777Right-handed alpha
Helix 56
AG2
K
784 789Right-handed alpha
Helix 57
AG3
K
790 806Right-handed alpha
Helix 58
AG4
K
817 830Right-handed alpha
Helix 59
AG5
K
842 855Right-handed alpha
Helix 60
AG6
K
867 871Right-handed alpha
Helix 61
AG7
K
891 900Right-handed alpha
Helix 62
AG8
K
920 933Right-handed alpha
Helix 63
AG9
K
933 943Right-handed alpha
Helix 64
AH1
K
977 985Right-handed alpha
Helix 65
AH2
K
988 1005Right-handed alpha
Helix 66
AH3
K
1044 1052Right-handed alpha
Helix 67
AH4
L
50 61Right-handed alpha
Helix 68
AH5
L
79 94Right-handed alpha
Helix 69
AH6
L
115 128Right-handed alpha
Helix 70
AH7
L
141 149Right-handed alpha
Helix 71
AH8
L
185 198Right-handed alpha
Helix 72
AH9
L
199 201Right-handed 310
Helix 73
AI1
L
215 226Right-handed alpha
Helix 74
AI2
L
226 235Right-handed alpha
Helix 75
AI3
L
242 256Right-handed alpha
Helix 76
AI4
L
282 285Right-handed 310
Helix 77
AI5
L
293 296Right-handed 310
Helix 78
AI6
L
303 312Right-handed alpha
Helix 79
AI7
L
313 314Right-handed 310
Helix 80
AI8
L
315 319Right-handed 310
Helix 81
AI9
L
324 327Right-handed 310
Helix 82
AJ1
L
328 343Right-handed alpha
Helix 83
AJ2
L
381 389Right-handed alpha
Helix 84
AJ3
L
397 401Right-handed 310
Helix 85
AJ4
L
403 416Right-handed alpha
Helix 86
AJ5
L
428 434Right-handed alpha
Helix 87
AJ6
L
434 445Right-handed alpha
Helix 88
AJ7
L
448 452Right-handed 310
Helix 89
AJ8
L
456 465Right-handed alpha
Helix 90
AJ9
M
5 8Right-handed 310
Helix 91
AK1
M
47 49Right-handed 310
Helix 92
AK2
M
57 61Right-handed 310
Helix 93
AK3
M
75 98Right-handed alpha
Helix 94
AK4
M
100 104Right-handed 310
Helix 95
AK5
M
120 134Right-handed alpha
Helix 96
AK6
M
145 153Right-handed alpha
Helix 97
AK7
M
190 202Right-handed alpha
Helix 98
AK8
M
206 216Right-handed alpha
Helix 99
AK9
M
275 279Right-handed 310
Helix 100
AL1
M
295 300Right-handed 310
Helix 101
AL2
M
302 318Right-handed alpha
Helix 102
AL3
M
322 331Right-handed alpha
Helix 103
AL4
M
337 342Right-handed 310
Helix 104
AL5
M
344 358Right-handed alpha
Helix 105
AL6
M
363 374Right-handed alpha
Helix 106
AL7
M
416 423Right-handed alpha
Helix 107
AL8
M
426 441Right-handed alpha
Helix 108
AL9
M
450 458Right-handed alpha
Helix 109
AM1
M
461 466Right-handed alpha
Helix 110
AM2
N
2 10Right-handed alpha
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There are 23 sheets in PDB entry 6VZ4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
84 85first strand
Strand 2
B
81 82parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
119 120first strand
Strand 2
B
46 47parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
97 99first strand
Strand 2
G
101 103parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
43 44first strand
Strand 2
D
89 90parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
78 79first strand
Strand 2
D
54 55parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
101 103first strand
Strand 2
F
97 99parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
84 85first strand
Strand 2
F
81 82parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
119 120first strand
Strand 2
F
46 47parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
43 44first strand
Strand 2
H
89 90parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
78 79first strand
Strand 2
H
54 55parallel
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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
547 549first strand
Strand 2
K
571 574parallel
Strand 3
K
522 525parallel
Strand 4
K
593 596parallel
Strand 5
K
622 625parallel
Strand 6
K
491 493parallel
Strand 7
K
694 695parallel
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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
714 716first strand
Strand 2
K
911 917parallel
Strand 3
K
881 884parallel
Strand 4
K
810 814parallel
Strand 5
K
862 866parallel
Strand 6
K
834 837parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
29 32first strand
Strand 2
L
16 21anti-parallel
Strand 3
L
8 12anti-parallel
Strand 4
L
104 108parallel
Strand 5
L
136 140parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
46 48first strand
Strand 2
L
34 38anti-parallel
Strand 3
L
66 69anti-parallel
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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
180 182first strand
Strand 2
L
164 169anti-parallel
Strand 3
L
154 159anti-parallel
Strand 4
L
392 395parallel
Strand 5
L
423 424parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
287 291first strand
Strand 2
L
298 302anti-parallel
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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
35 38first strand
Strand 2
M
18 23anti-parallel
Strand 3
M
10 13anti-parallel
Strand 4
M
111 115parallel
Strand 5
M
140 144parallel
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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
51 54first strand
Strand 2
M
41 45anti-parallel
Strand 3
M
63 65anti-parallel
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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
68 69first strand
Strand 2
M
72 73anti-parallel
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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
178 179first strand
Strand 2
M
169 175anti-parallel
Strand 3
M
185 187anti-parallel
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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
178 179first strand
Strand 2
M
169 175anti-parallel
Strand 3
M
159 164anti-parallel
Strand 4
M
333 336parallel
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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
282 285first strand
Strand 2
M
291 294anti-parallel
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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
25 30first strand
Strand 2
N
60 65anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il