Analysis of interatomic Contacts of Structural Units in PDB entry:
6VZW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6VZW entry

There are 4 chains in PDB entry 6VZW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 57	PHE 460
B	LYS 57	PHE 460
C	LYS 57	PHE 460
D	LYS 58	PRO 140

There are 60 helices in PDB entry 6VZW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	69	80	Right-handed alpha
Helix 2	AA2	A	100	106	Right-handed alpha
Helix 3	AA3	A	119	124	Right-handed alpha
Helix 4	AA4	A	124	139	Right-handed alpha
Helix 5	AA5	A	155	166	Right-handed alpha
Helix 6	AA6	A	189	193	Right-handed 310
Helix 7	AA7	A	257	262	Right-handed alpha
Helix 8	AA8	A	264	269	Right-handed alpha
Helix 9	AA9	A	286	296	Right-handed alpha
Helix 10	AB1	A	299	330	Right-handed alpha
Helix 11	AB2	A	370	388	Right-handed alpha
Helix 12	AB3	A	389	393	Right-handed 310
Helix 13	AB4	A	394	411	Right-handed alpha
Helix 14	AB5	A	414	440	Right-handed alpha
Helix 15	AB6	A	453	460	Right-handed 310
Helix 16	AB7	B	69	80	Right-handed alpha
Helix 17	AB8	B	100	106	Right-handed alpha
Helix 18	AB9	B	119	124	Right-handed alpha
Helix 19	AC1	B	124	139	Right-handed alpha
Helix 20	AC2	B	155	166	Right-handed alpha
Helix 21	AC3	B	189	193	Right-handed 310
Helix 22	AC4	B	257	262	Right-handed alpha
Helix 23	AC5	B	264	269	Right-handed alpha
Helix 24	AC6	B	286	296	Right-handed alpha
Helix 25	AC7	B	299	330	Right-handed alpha
Helix 26	AC8	B	370	388	Right-handed alpha
Helix 27	AC9	B	389	393	Right-handed 310
Helix 28	AD1	B	394	411	Right-handed alpha
Helix 29	AD2	B	419	438	Right-handed alpha
Helix 30	AD3	B	453	460	Right-handed 310
Helix 31	AD4	C	69	80	Right-handed alpha
Helix 32	AD5	C	100	106	Right-handed alpha
Helix 33	AD6	C	119	124	Right-handed alpha
Helix 34	AD7	C	124	139	Right-handed alpha
Helix 35	AD8	C	155	166	Right-handed alpha
Helix 36	AD9	C	189	193	Right-handed 310
Helix 37	AE1	C	257	262	Right-handed alpha
Helix 38	AE2	C	264	269	Right-handed alpha
Helix 39	AE3	C	286	296	Right-handed alpha
Helix 40	AE4	C	299	330	Right-handed alpha
Helix 41	AE5	C	370	388	Right-handed alpha
Helix 42	AE6	C	389	393	Right-handed 310
Helix 43	AE7	C	394	411	Right-handed alpha
Helix 44	AE8	C	416	438	Right-handed alpha
Helix 45	AE9	C	453	460	Right-handed 310
Helix 46	AF1	D	69	80	Right-handed alpha
Helix 47	AF2	D	100	106	Right-handed alpha
Helix 48	AF3	D	119	124	Right-handed alpha
Helix 49	AF4	D	124	139	Right-handed alpha
Helix 50	AF5	D	155	166	Right-handed alpha
Helix 51	AF6	D	189	193	Right-handed 310
Helix 52	AF7	D	257	262	Right-handed alpha
Helix 53	AF8	D	264	269	Right-handed alpha
Helix 54	AF9	D	286	296	Right-handed alpha
Helix 55	AG1	D	299	330	Right-handed alpha
Helix 56	AG2	D	370	388	Right-handed alpha
Helix 57	AG3	D	389	393	Right-handed 310
Helix 58	AG4	D	394	411	Right-handed alpha
Helix 59	AG5	D	414	440	Right-handed alpha
Helix 60	AG6	D	453	460	Right-handed 310

There are 16 sheets in PDB entry 6VZW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	83	first strand
Strand 2	A	61	66	parallel
Strand 3	A	92	95	parallel
Strand 4	A	112	113	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	152	first strand
Strand 2	A	199	203	anti-parallel
Strand 3	A	171	174	anti-parallel
Strand 4	A	185	187	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	211	first strand
Strand 2	A	214	226	anti-parallel
Strand 3	A	341	349	anti-parallel
Strand 4	A	355	361	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	283	285	first strand
Strand 2	A	239	242	anti-parallel
Strand 3	A	214	226	anti-parallel
Strand 4	A	231	235	anti-parallel
Strand 5	A	444	448	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	83	first strand
Strand 2	B	61	66	parallel
Strand 3	B	92	95	parallel
Strand 4	B	112	113	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	152	first strand
Strand 2	B	199	203	anti-parallel
Strand 3	B	171	174	anti-parallel
Strand 4	B	185	187	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	210	211	first strand
Strand 2	B	214	226	anti-parallel
Strand 3	B	341	349	anti-parallel
Strand 4	B	355	361	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	285	first strand
Strand 2	B	239	242	anti-parallel
Strand 3	B	214	226	anti-parallel
Strand 4	B	231	235	anti-parallel
Strand 5	B	444	448	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	82	83	first strand
Strand 2	C	61	66	parallel
Strand 3	C	92	95	parallel
Strand 4	C	112	113	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	149	152	first strand
Strand 2	C	199	203	anti-parallel
Strand 3	C	171	174	anti-parallel
Strand 4	C	185	187	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	210	211	first strand
Strand 2	C	214	226	anti-parallel
Strand 3	C	341	349	anti-parallel
Strand 4	C	355	361	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	283	285	first strand
Strand 2	C	239	242	anti-parallel
Strand 3	C	214	226	anti-parallel
Strand 4	C	231	235	anti-parallel
Strand 5	C	444	448	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	82	83	first strand
Strand 2	D	61	63	parallel
Strand 3	D	92	93	parallel
Strand 4	D	112	113	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	149	152	first strand
Strand 2	D	199	203	anti-parallel
Strand 3	D	171	174	anti-parallel
Strand 4	D	185	187	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	210	211	first strand
Strand 2	D	214	226	anti-parallel
Strand 3	D	341	349	anti-parallel
Strand 4	D	355	361	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	283	285	first strand
Strand 2	D	239	242	anti-parallel
Strand 3	D	214	226	anti-parallel
Strand 4	D	231	235	anti-parallel
Strand 5	D	444	448	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6VZW

Analysis of interatomic Contacts of Structural Units in PDB entry:
6VZW