Analysis of interatomic Contacts of Structural Units in PDB entry:
6W8D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6W8D entry

There are 8 chains in PDB entry 6W8D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLU 629VAL 912
B
PHE 179SER 379
D
ALA 628VAL 912
C
ARG 187PHE 378
E
G 422 G 426
E
G 428 G 446
F
G 422 G 426
F
G 428 G 446
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 6W8D. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
644 653Right-handed alpha
Helix 2
AA2
A
666 677Right-handed alpha
Helix 3
AA3
A
686 690Right-handed 310
Helix 4
AA4
A
691 699Right-handed alpha
Helix 5
AA5
A
729 742Right-handed alpha
Helix 6
AA6
A
762 774Right-handed alpha
Helix 7
AA7
A
783 785Right-handed 310
Helix 8
AA8
A
814 819Right-handed 310
Helix 9
AA9
A
836 840Right-handed 310
Helix 10
AB1
A
860 869Right-handed alpha
Helix 11
AB2
A
881 891Right-handed alpha
Helix 12
AB3
A
894 903Right-handed alpha
Helix 13
AB4
A
904 908Right-handed 310
Helix 14
AB5
B
199 205Right-handed alpha
Helix 15
AB6
B
228 234Right-handed alpha
Helix 16
AB7
B
255 271Right-handed alpha
Helix 17
AB8
B
291 303Right-handed alpha
Helix 18
AB9
B
327 333Right-handed alpha
Helix 19
AC1
B
339 353Right-handed alpha
Helix 20
AC2
B
361 375Right-handed 310
Helix 21
AC3
D
644 653Right-handed alpha
Helix 22
AC4
D
666 677Right-handed alpha
Helix 23
AC5
D
686 690Right-handed 310
Helix 24
AC6
D
691 699Right-handed alpha
Helix 25
AC7
D
729 742Right-handed alpha
Helix 26
AC8
D
762 774Right-handed alpha
Helix 27
AC9
D
783 785Right-handed 310
Helix 28
AD1
D
814 819Right-handed 310
Helix 29
AD2
D
836 840Right-handed 310
Helix 30
AD3
D
860 869Right-handed alpha
Helix 31
AD4
D
881 892Right-handed alpha
Helix 32
AD5
D
894 903Right-handed alpha
Helix 33
AD6
D
904 908Right-handed 310
Helix 34
AD7
C
199 207Right-handed alpha
Helix 35
AD8
C
223 227Right-handed 310
Helix 36
AD9
C
228 235Right-handed alpha
Helix 37
AE1
C
255 271Right-handed alpha
Helix 38
AE2
C
291 303Right-handed alpha
Helix 39
AE3
C
327 333Right-handed alpha
Helix 40
AE4
C
340 352Right-handed alpha
Helix 41
AE5
C
360 368Right-handed alpha
Helix 42
AE6
C
369 372Right-handed 310
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There are 6 sheets in PDB entry 6W8D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
681 683first strand
Strand 2
A
657 663parallel
Strand 3
A
634 639parallel
Strand 4
A
703 706parallel
Strand 5
A
752 758parallel
Strand 6
A
791 796anti-parallel
Strand 7
A
778 781anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
823 825first strand
Strand 2
A
850 852anti-parallel
Strand 3
A
855 857anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
218 221first strand
Strand 2
B
192 195parallel
Strand 3
B
240 244parallel
Strand 4
B
281 286parallel
Strand 5
B
320 325anti-parallel
Strand 6
B
307 310anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
682 683first strand
Strand 2
D
657 663parallel
Strand 3
D
634 639parallel
Strand 4
D
703 706parallel
Strand 5
D
752 758parallel
Strand 6
D
791 796anti-parallel
Strand 7
D
778 781anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
823 825first strand
Strand 2
D
850 852anti-parallel
Strand 3
D
855 857anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
219 221first strand
Strand 2
C
192 195parallel
Strand 3
C
240 244parallel
Strand 4
C
281 286parallel
Strand 5
C
320 325anti-parallel
Strand 6
C
307 310anti-parallel
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