Analysis of interatomic Contacts of Structural Units in PDB entry:
6WJC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6WJC entry

There are 2 chains in PDB entry 6WJC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 17TRP 437
C
 GLY -3LYS 65
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 6WJC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 53Right-handed alpha
Helix 2
AA2
A
58 77Right-handed alpha
Helix 3
AA3
A
77 89Right-handed alpha
Helix 4
AA4
A
93 129Right-handed alpha
Helix 5
AA5
A
133 137Right-handed 310
Helix 6
AA6
A
140 168Right-handed alpha
Helix 7
AA7
A
180 184Right-handed 310
Helix 8
AA8
A
185 197Right-handed alpha
Helix 9
AA9
A
197 1011Right-handed alpha
Helix 10
AB1
A
1037 1049Right-handed alpha
Helix 11
AB2
A
1058 1079Right-handed alpha
Helix 12
AB3
A
1082 1090Right-handed alpha
Helix 13
AB4
A
1091 1105Right-handed alpha
Helix 14
AB5
A
1106 1111Right-handed alpha
Helix 15
AB6
A
1113 1121Right-handed alpha
Helix 16
AB7
A
1124 1134Right-handed alpha
Helix 17
AB8
A
1135 1141Right-handed alpha
Helix 18
AB9
A
1143 1155Right-handed alpha
Helix 19
AC1
A
358 391Right-handed alpha
Helix 20
AC2
A
396 422Right-handed alpha
Helix 21
AC3
A
422 434Right-handed alpha
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There are 3 sheets in PDB entry 6WJC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1013 1018first strand
Strand 2
A
1024 1027anti-parallel
Strand 3
A
1030 1033anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 5first strand
Strand 2
C
13 16anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
36 43first strand
Strand 2
C
23 30anti-parallel
Strand 3
C
54 58anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il