Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 6X0V entry
There are 4 chains in PDB entry 6X0V
(CSU analysis of residue contacts immediately below table)
Chain ID |
Initial residue | Terminal residue |
E
|
THR 35 | CYS 80 |
F
|
ARG 5 | LYS 103 |
G
|
ARG 56 | GLN 90 |
H
|
ARG 58 | PHE 92 |
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There are 11
helices in PDB entry 6X0V. Click on helix of interest for
CSU analysis.
Helix number
| Helix ID | Chain ID |
Initial residue | Terminal residue |
Helix class |
Helix 1 |
AA1 | E
| 37 |
49 | Right-handed alpha |
Helix 2 |
AA2 | E
| 52 |
65 | Right-handed alpha |
Helix 3 |
AA3 | E
| 68 |
79 | Right-handed alpha |
Helix 4 |
AA4 | F
| 6 |
18 | Right-handed alpha |
Helix 5 |
AA5 | F
| 27 |
32 | Right-handed alpha |
Helix 6 |
AA6 | F
| 46 |
56 | Right-handed alpha |
Helix 7 |
AA7 | F
| 61 |
73 | Right-handed alpha |
Helix 8 |
AA8 | F
| 77 |
87 | Right-handed alpha |
Helix 9 |
AA9 | F
| 92 |
103 | Right-handed alpha |
Helix 10 |
AB1 | G
| 61 |
90 | Right-handed alpha |
Helix 11 |
AB2 | H
| 61 |
91 | Right-handed alpha |
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There are no sheets in PDB entry
6X0V
Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il