Analysis of interatomic Contacts of Structural Units in PDB entry:
6XOX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6XOX entry

There are 6 chains in PDB entry 6XOX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LEU 12LEU 394
B
SER 2ASN 340
E
VAL 2LEU 235
G
ASN 5GLU 63
N
GLN 1SER 128
R
ALA 28ARG 421
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 6XOX. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
15 38Right-handed alpha
Helix 2
AA2
A
235 241Right-handed 310
Helix 3
AA3
A
264 279Right-handed alpha
Helix 4
AA4
A
293 304Right-handed alpha
Helix 5
AA5
A
308 312Right-handed alpha
Helix 6
AA6
A
313 316Right-handed 310
Helix 7
AA7
A
331 351Right-handed alpha
Helix 8
AA8
A
371 390Right-handed alpha
Helix 9
AA9
B
3 25Right-handed alpha
Helix 10
AB1
E
28 32Right-handed 310
Helix 11
AB2
E
53 56Right-handed 310
Helix 12
AB3
G
6 24Right-handed alpha
Helix 13
AB4
G
29 44Right-handed alpha
Helix 14
AB5
N
28 32Right-handed 310
Helix 15
AB6
N
87 91Right-handed 310
Helix 16
AB7
R
31 51Right-handed alpha
Helix 17
AB8
R
136 141Right-handed alpha
Helix 18
AB9
R
141 168Right-handed alpha
Helix 19
AC1
R
174 210Right-handed alpha
Helix 20
AC2
R
214 223Right-handed alpha
Helix 21
AC3
R
223 256Right-handed alpha
Helix 22
AC4
R
261 292Right-handed alpha
Helix 23
AC5
R
302 337Right-handed alpha
Helix 24
AC6
R
345 361Right-handed alpha
Helix 25
AC7
R
362 368Right-handed 310
Helix 26
AC8
R
378 403Right-handed alpha
Helix 27
AC9
R
406 419Right-handed alpha
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There are 17 sheets in PDB entry 6XOX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
211 214first strand
Strand 2
A
217 223anti-parallel
Strand 3
A
40 47parallel
Strand 4
A
243 249parallel
Strand 5
A
286 292parallel
Strand 6
A
359 361parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
47 51first strand
Strand 2
B
336 339anti-parallel
Strand 3
B
327 331anti-parallel
Strand 4
B
315 320anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
58 63first strand
Strand 2
B
69 74anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
88 89anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
58 63first strand
Strand 2
B
69 74anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
93 94anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
100 105first strand
Strand 2
B
111 116anti-parallel
Strand 3
B
121 125anti-parallel
Strand 4
B
134 139anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
146 151first strand
Strand 2
B
156 161anti-parallel
Strand 3
B
165 170anti-parallel
Strand 4
B
175 181anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
189 191first strand
Strand 2
B
200 202anti-parallel
Strand 3
B
207 211anti-parallel
Strand 4
B
218 223anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
229 234first strand
Strand 2
B
240 245anti-parallel
Strand 3
B
250 254anti-parallel
Strand 4
B
260 264anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
273 278first strand
Strand 2
B
284 289anti-parallel
Strand 3
B
294 298anti-parallel
Strand 4
B
304 308anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
3 7first strand
Strand 2
E
17 25anti-parallel
Strand 3
E
78 84anti-parallel
Strand 4
E
68 73anti-parallel
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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
10 12first strand
Strand 2
E
115 119parallel
Strand 3
E
92 99anti-parallel
Strand 4
E
33 39anti-parallel
Strand 5
E
45 51anti-parallel
Strand 6
E
58 60anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
10 12first strand
Strand 2
E
115 119parallel
Strand 3
E
92 99anti-parallel
Strand 4
E
110 111anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
129 130first strand
Strand 2
E
143 148anti-parallel
Strand 3
E
199 204anti-parallel
Strand 4
E
191 196anti-parallel
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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
134 135first strand
Strand 2
E
231 233parallel
Strand 3
E
214 219anti-parallel
Strand 4
E
162 167anti-parallel
Strand 5
E
174 178anti-parallel
Strand 6
E
182 183anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
3 7first strand
Strand 2
N
17 25anti-parallel
Strand 3
N
78 84anti-parallel
Strand 4
N
68 73anti-parallel
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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
11 12first strand
Strand 2
N
122 126parallel
Strand 3
N
92 98anti-parallel
Strand 4
N
34 39anti-parallel
Strand 5
N
45 51anti-parallel
Strand 6
N
58 60anti-parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
79 83first strand
Strand 2
R
100 104anti-parallel
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