Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y2G


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6Y2G entry

There are 2 chains in PDB entry 6Y2G (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 1SER 301
B
SER 1VAL 303
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 21 helices in PDB entry 6Y2G. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
10 15Right-handed alpha
Helix 2
AA2
A
41 44Right-handed 310
Helix 3
AA3
A
53 60Right-handed alpha
Helix 4
AA4
A
62 66Right-handed 310
Helix 5
AA5
A
200 214Right-handed alpha
Helix 6
AA6
A
226 235Right-handed alpha
Helix 7
AA7
A
236 238Right-handed 310
Helix 8
AA8
A
243 258Right-handed alpha
Helix 9
AA9
A
260 275Right-handed alpha
Helix 10
AB1
A
292 301Right-handed alpha
Helix 11
AB2
B
10 15Right-handed alpha
Helix 12
AB3
B
41 44Right-handed 310
Helix 13
AB4
B
47 51Right-handed 310
Helix 14
AB5
B
53 61Right-handed alpha
Helix 15
AB6
B
62 66Right-handed 310
Helix 16
AB7
B
200 214Right-handed alpha
Helix 17
AB8
B
226 237Right-handed alpha
Helix 18
AB9
B
243 250Right-handed alpha
Helix 19
AC1
B
250 256Right-handed alpha
Helix 20
AC2
B
260 275Right-handed alpha
Helix 21
AC3
B
292 300Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 6Y2G. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
73 75first strand
Strand 2
A
67 70anti-parallel
Strand 3
A
17 22anti-parallel
Strand 4
A
25 32anti-parallel
Strand 5
A
35 39anti-parallel
Strand 6
A
86 91anti-parallel
Strand 7
A
77 83anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
100 103first strand
Strand 2
A
156 166parallel
Strand 3
A
148 153anti-parallel
Strand 4
A
111 118anti-parallel
Strand 5
A
121 129anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
100 103first strand
Strand 2
A
156 166parallel
Strand 3
A
172 175anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
73 75first strand
Strand 2
B
67 70anti-parallel
Strand 3
B
17 22anti-parallel
Strand 4
B
25 32anti-parallel
Strand 5
B
35 39anti-parallel
Strand 6
B
86 91anti-parallel
Strand 7
B
77 83anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
101 103first strand
Strand 2
B
156 166parallel
Strand 3
B
148 153anti-parallel
Strand 4
B
111 118anti-parallel
Strand 5
B
121 129anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
101 103first strand
Strand 2
B
156 166parallel
Strand 3
B
172 175anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il