Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y5R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6Y5R entry

There are 2 chains in PDB entry 6Y5R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 102GLU 1093
B
 MET 102GLU 1093
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 69 helices in PDB entry 6Y5R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
111 121Right-handed alpha
Helix 2
AA2
A
136 141Right-handed alpha
Helix 3
AA3
A
141 149Right-handed alpha
Helix 4
AA4
A
151 156Right-handed alpha
Helix 5
AA5
A
156 193Right-handed alpha
Helix 6
AA6
A
200 243Right-handed alpha
Helix 7
AA7
A
261 284Right-handed alpha
Helix 8
AA8
A
285 314Right-handed alpha
Helix 9
AA9
A
352 359Right-handed alpha
Helix 10
AB1
A
370 376Right-handed alpha
Helix 11
AB2
A
390 394Right-handed 310
Helix 12
AB3
A
433 442Right-handed alpha
Helix 13
AB4
A
443 445Right-handed 310
Helix 14
AB5
A
447 453Right-handed 310
Helix 15
AB6
A
460 491Right-handed alpha
Helix 16
AB7
A
509 513Right-handed 310
Helix 17
AB8
A
517 550Right-handed alpha
Helix 18
AB9
A
554 561Right-handed 310
Helix 19
AC1
A
569 584Right-handed alpha
Helix 20
AC2
A
587 616Right-handed alpha
Helix 21
AC3
A
629 675Right-handed alpha
Helix 22
AC4
A
678 696Right-handed alpha
Helix 23
AC5
A
722 734Right-handed alpha
Helix 24
AC6
A
748 751Right-handed 310
Helix 25
AC7
A
752 770Right-handed alpha
Helix 26
AC8
A
783 795Right-handed alpha
Helix 27
AC9
A
819 835Right-handed alpha
Helix 28
AD1
A
844 848Right-handed 310
Helix 29
AD2
A
868 881Right-handed alpha
Helix 30
AD3
A
906 919Right-handed alpha
Helix 31
AD4
A
929 931Right-handed 310
Helix 32
AD5
A
932 946Right-handed alpha
Helix 33
AD6
A
1029 1048Right-handed alpha
Helix 34
AD7
A
1063 1065Right-handed 310
Helix 35
AD8
A
1066 1078Right-handed alpha
Helix 36
AD9
B
111 121Right-handed alpha
Helix 37
AE1
B
140 149Right-handed alpha
Helix 38
AE2
B
151 156Right-handed alpha
Helix 39
AE3
B
156 193Right-handed alpha
Helix 40
AE4
B
200 243Right-handed alpha
Helix 41
AE5
B
261 284Right-handed alpha
Helix 42
AE6
B
285 314Right-handed alpha
Helix 43
AE7
B
354 359Right-handed alpha
Helix 44
AE8
B
370 376Right-handed alpha
Helix 45
AE9
B
390 394Right-handed 310
Helix 46
AF1
B
433 442Right-handed alpha
Helix 47
AF2
B
443 445Right-handed 310
Helix 48
AF3
B
447 453Right-handed 310
Helix 49
AF4
B
460 489Right-handed alpha
Helix 50
AF5
B
509 513Right-handed 310
Helix 51
AF6
B
517 550Right-handed alpha
Helix 52
AF7
B
554 561Right-handed 310
Helix 53
AF8
B
569 584Right-handed alpha
Helix 54
AF9
B
587 616Right-handed alpha
Helix 55
AG1
B
629 675Right-handed alpha
Helix 56
AG2
B
678 696Right-handed alpha
Helix 57
AG3
B
722 734Right-handed alpha
Helix 58
AG4
B
748 751Right-handed 310
Helix 59
AG5
B
752 770Right-handed alpha
Helix 60
AG6
B
783 795Right-handed alpha
Helix 61
AG7
B
819 835Right-handed alpha
Helix 62
AG8
B
844 848Right-handed 310
Helix 63
AG9
B
868 881Right-handed alpha
Helix 64
AH1
B
884 888Right-handed 310
Helix 65
AH2
B
906 919Right-handed alpha
Helix 66
AH3
B
929 931Right-handed 310
Helix 67
AH4
B
932 946Right-handed alpha
Helix 68
AH5
B
1029 1048Right-handed alpha
Helix 69
AH6
B
1066 1078Right-handed alpha
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There are 6 sheets in PDB entry 6Y5R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 330first strand
Strand 2
A
322 326anti-parallel
Strand 3
A
378 382anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
343 344first strand
Strand 2
A
349 350anti-parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
775 781first strand
Strand 2
A
739 746parallel
Strand 3
A
708 711parallel
Strand 4
A
804 808parallel
Strand 5
A
838 843parallel
Strand 6
A
1084 1088anti-parallel
Strand 7
A
1052 1056parallel
Strand 8
A
859 863parallel
Strand 9
A
889 894parallel
Strand 10
A
921 924parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
329 330first strand
Strand 2
B
322 326anti-parallel
Strand 3
B
378 382anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
342 344first strand
Strand 2
B
349 351anti-parallel
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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
775 781first strand
Strand 2
B
740 746parallel
Strand 3
B
708 711parallel
Strand 4
B
804 808parallel
Strand 5
B
838 843parallel
Strand 6
B
1084 1088anti-parallel
Strand 7
B
1053 1056parallel
Strand 8
B
859 863parallel
Strand 9
B
889 894parallel
Strand 10
B
921 924parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il