Analysis of interatomic Contacts of Structural Units in PDB entry:
6YB8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YB8 entry

There are 2 chains in PDB entry 6YB8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LEU 7LEU 425
B
LEU 7LEU 425
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 6YB8. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
52 72Right-handed alpha
Helix 2
AA2
A
106 112Right-handed alpha
Helix 3
AA3
A
141 148Right-handed alpha
Helix 4
AA4
A
158 181Right-handed alpha
Helix 5
AA5
A
220 225Right-handed 310
Helix 6
AA6
A
228 233Right-handed alpha
Helix 7
AA7
A
238 256Right-handed alpha
Helix 8
AA8
A
257 261Right-handed 310
Helix 9
AA9
A
274 276Right-handed 310
Helix 10
AB1
A
277 290Right-handed alpha
Helix 11
AB2
A
305 318Right-handed alpha
Helix 12
AB3
A
334 343Right-handed alpha
Helix 13
AB4
A
357 362Right-handed alpha
Helix 14
AB5
A
362 367Right-handed alpha
Helix 15
AB6
A
379 393Right-handed alpha
Helix 16
AB7
A
395 421Right-handed alpha
Helix 17
AB8
A
422 425Right-handed 310
Helix 18
AB9
B
52 72Right-handed alpha
Helix 19
AC1
B
106 112Right-handed alpha
Helix 20
AC2
B
141 148Right-handed alpha
Helix 21
AC3
B
158 181Right-handed alpha
Helix 22
AC4
B
220 225Right-handed 310
Helix 23
AC5
B
228 233Right-handed alpha
Helix 24
AC6
B
240 257Right-handed alpha
Helix 25
AC7
B
258 261Right-handed 310
Helix 26
AC8
B
274 276Right-handed 310
Helix 27
AC9
B
277 290Right-handed alpha
Helix 28
AD1
B
305 318Right-handed alpha
Helix 29
AD2
B
334 343Right-handed alpha
Helix 30
AD3
B
357 362Right-handed alpha
Helix 31
AD4
B
362 367Right-handed alpha
Helix 32
AD5
B
379 393Right-handed alpha
Helix 33
AD6
B
395 422Right-handed alpha
Helix 34
AD7
B
423 425Right-handed 310
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There are 12 sheets in PDB entry 6YB8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
9 15first strand
Strand 2
A
19 24anti-parallel
Strand 3
A
30 35anti-parallel
Strand 4
A
85 89anti-parallel
Strand 5
A
79 80anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
38 41first strand
Strand 2
A
46 49anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
91 93first strand
Strand 2
A
185 197anti-parallel
Strand 3
A
203 206anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
139 140first strand
Strand 2
A
120 130anti-parallel
Strand 3
A
96 103anti-parallel
Strand 4
A
185 197anti-parallel
Strand 5
A
214 218anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
151 152first strand
Strand 2
A
155 156anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
295 299first strand
Strand 2
A
267 272parallel
Strand 3
A
323 328parallel
Strand 4
A
347 349parallel
Strand 5
A
375 376parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
9 15first strand
Strand 2
B
19 24anti-parallel
Strand 3
B
30 35anti-parallel
Strand 4
B
85 89anti-parallel
Strand 5
B
79 80anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
38 41first strand
Strand 2
B
46 49anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
91 93first strand
Strand 2
B
194 197anti-parallel
Strand 3
B
203 205anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
139 140first strand
Strand 2
B
120 130anti-parallel
Strand 3
B
96 103anti-parallel
Strand 4
B
185 192anti-parallel
Strand 5
B
214 218anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
151 152first strand
Strand 2
B
155 156anti-parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
295 299first strand
Strand 2
B
268 272parallel
Strand 3
B
324 328parallel
Strand 4
B
347 349parallel
Strand 5
B
375 376parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il