Analysis of interatomic Contacts of Structural Units in PDB entry:
6YBO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YBO entry

There is 1 chain in PDB entry 6YBO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
TYR 3ARG 387
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 6YBO. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
6 9Right-handed 310
Helix 2
AA2
A
15 19Right-handed alpha
Helix 3
AA3
A
35 47Right-handed alpha
Helix 4
AA4
A
55 59Right-handed alpha
Helix 5
AA5
A
64 83Right-handed alpha
Helix 6
AA6
A
96 100Right-handed 310
Helix 7
AA7
A
108 129Right-handed alpha
Helix 8
AA8
A
145 149Right-handed 310
Helix 9
AA9
A
150 173Right-handed alpha
Helix 10
AB1
A
195 204Right-handed alpha
Helix 11
AB2
A
208 210Right-handed 310
Helix 12
AB3
A
217 223Right-handed alpha
Helix 13
AB4
A
227 238Right-handed alpha
Helix 14
AB5
A
264 279Right-handed alpha
Helix 15
AB6
A
295 323Right-handed alpha
Helix 16
AB7
A
323 333Right-handed alpha
Helix 17
AB8
A
334 339Right-handed alpha
Helix 18
AB9
A
346 353Right-handed alpha
Helix 19
AC1
A
354 357Right-handed 310
Helix 20
AC2
A
361 368Right-handed alpha
Helix 21
AC3
A
371 385Right-handed alpha
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There are 2 sheets in PDB entry 6YBO. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
212 214first strand
Strand 2
A
177 180parallel
Strand 3
A
133 136parallel
Strand 4
A
85 90parallel
Strand 5
A
50 54parallel
Strand 6
A
11 14parallel
Strand 7
A
284 286parallel
Strand 8
A
245 246parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
142 143first strand
Strand 2
A
190 191anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il