Analysis of interatomic Contacts of Structural Units in PDB entry:
6YHU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YHU entry

There are 4 chains in PDB entry 6YHU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1LEU 71
B
 SER 76ASN 192
C
 SER 1LEU 71
D
 SER 76ALA 191
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 6YHU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 20Right-handed alpha
Helix 2
AA2
A
21 24Right-handed 310
Helix 3
AA3
A
25 41Right-handed alpha
Helix 4
AA4
A
44 61Right-handed alpha
Helix 5
AA5
A
67 71Right-handed 310
Helix 6
AA6
B
77 99Right-handed alpha
Helix 7
AA7
B
100 112Right-handed alpha
Helix 8
AA8
B
134 141Right-handed alpha
Helix 9
AA9
B
168 172Right-handed 310
Helix 10
AB1
B
176 180Right-handed 310
Helix 11
AB2
C
2 20Right-handed alpha
Helix 12
AB3
C
21 24Right-handed 310
Helix 13
AB4
C
25 41Right-handed alpha
Helix 14
AB5
C
44 62Right-handed alpha
Helix 15
AB6
C
67 71Right-handed 310
Helix 16
AB7
D
78 99Right-handed alpha
Helix 17
AB8
D
100 112Right-handed alpha
Helix 18
AB9
D
134 141Right-handed alpha
Helix 19
AC1
D
168 172Right-handed 310
Helix 20
AC2
D
176 180Right-handed 310
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There are 2 sheets in PDB entry 6YHU. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
115 116first strand
Strand 2
B
128 132anti-parallel
Strand 3
B
184 190anti-parallel
Strand 4
B
152 160anti-parallel
Strand 5
B
146 149anti-parallel
Strand 6
B
142 143anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
127 132first strand
Strand 2
D
184 190anti-parallel
Strand 3
D
152 160anti-parallel
Strand 4
D
146 149anti-parallel
Strand 5
D
142 143anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il