Analysis of interatomic Contacts of Structural Units in PDB entry:
6YOV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6YOV entry

There are 12 chains in PDB entry 6YOV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 40	GLU 134
B	VAL 22	GLY 103
C	GLY 9	PRO 118
D	SER 33	ALA 125
E	HIS 40	GLU 134
F	LEU 23	GLY 102
G	GLY 9	PRO 118
H	ARG 34	ALA 125
I	C 16	G 146
J	C 3	G 133
K	ALA 141	VAL 208
L	VAL 41	ARG 113

There are 42 helices in PDB entry 6YOV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	45	58	Right-handed alpha
Helix 2	AA2	A	64	77	Right-handed alpha
Helix 3	AA3	A	86	115	Right-handed alpha
Helix 4	AA4	A	121	132	Right-handed alpha
Helix 5	AA5	B	25	30	Right-handed 310
Helix 6	AA6	B	31	42	Right-handed alpha
Helix 7	AA7	B	50	77	Right-handed alpha
Helix 8	AA8	B	83	93	Right-handed alpha
Helix 9	AA9	C	17	22	Right-handed alpha
Helix 10	AB1	C	27	37	Right-handed alpha
Helix 11	AB2	C	47	74	Right-handed alpha
Helix 12	AB3	C	80	91	Right-handed alpha
Helix 13	AB4	C	91	98	Right-handed alpha
Helix 14	AB5	C	113	117	Right-handed 310
Helix 15	AB6	D	38	48	Right-handed alpha
Helix 16	AB7	D	56	85	Right-handed alpha
Helix 17	AB8	D	91	103	Right-handed alpha
Helix 18	AB9	D	104	123	Right-handed alpha
Helix 19	AC1	E	45	56	Right-handed alpha
Helix 20	AC2	E	64	77	Right-handed alpha
Helix 21	AC3	E	86	115	Right-handed alpha
Helix 22	AC4	E	121	133	Right-handed alpha
Helix 23	AC5	F	31	42	Right-handed alpha
Helix 24	AC6	F	50	77	Right-handed alpha
Helix 25	AC7	F	83	93	Right-handed alpha
Helix 26	AC8	G	17	23	Right-handed alpha
Helix 27	AC9	G	27	35	Right-handed alpha
Helix 28	AD1	G	46	74	Right-handed alpha
Helix 29	AD2	G	80	91	Right-handed alpha
Helix 30	AD3	G	93	98	Right-handed alpha
Helix 31	AD4	G	113	117	Right-handed 310
Helix 32	AD5	H	38	48	Right-handed alpha
Helix 33	AD6	H	56	85	Right-handed alpha
Helix 34	AD7	H	91	103	Right-handed alpha
Helix 35	AD8	H	104	124	Right-handed alpha
Helix 36	AD9	K	142	160	Right-handed alpha
Helix 37	AE1	K	163	176	Right-handed alpha
Helix 38	AE2	K	180	189	Right-handed alpha
Helix 39	AE3	K	193	208	Right-handed alpha
Helix 40	AE4	L	46	61	Right-handed alpha
Helix 41	AE5	L	67	81	Right-handed alpha
Helix 42	AE6	L	83	105	Right-handed alpha

There are 10 sheets in PDB entry 6YOV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	85	first strand
Strand 2	B	81	82	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	120	first strand
Strand 2	B	46	47	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	99	first strand
Strand 2	G	101	103	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	44	first strand
Strand 2	D	89	90	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	78	79	first strand
Strand 2	D	54	55	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	103	first strand
Strand 2	F	97	99	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	84	85	first strand
Strand 2	F	81	82	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	119	120	first strand
Strand 2	F	46	47	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	43	44	first strand
Strand 2	H	89	90	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	78	79	first strand
Strand 2	H	54	55	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6YOV

Analysis of interatomic Contacts of Structural Units in PDB entry:
6YOV