Analysis of interatomic Contacts of Structural Units in PDB entry:
7BQV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7BQV entry

There are 2 chains in PDB entry 7BQV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
CYS 318ILE 426
B
SER 409HIS 432
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 2 helices in PDB entry 7BQV. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
335 337Right-handed 310
Helix 2
AA2
B
421 431Right-handed alpha
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There are 3 sheets in PDB entry 7BQV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
330 333first strand
Strand 2
A
320 323anti-parallel
Strand 3
A
422 423anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
346 350first strand
Strand 2
A
356 362anti-parallel
Strand 3
A
413 418anti-parallel
Strand 4
A
397 404anti-parallel
Strand 5
A
384 391anti-parallel
Strand 6
A
368 375anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
410 411first strand
Strand 2
B
418 419anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il