Analysis of interatomic Contacts of Structural Units in PDB entry:
7CAL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7CAL entry

There are 4 chains in PDB entry 7CAL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LYS 49ASN 492
B
LYS 49ASN 492
C
LYS 49ASN 492
D
LYS 49ASN 492
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 76 helices in PDB entry 7CAL. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
61 72Right-handed alpha
Helix 2
AA2
A
75 83Right-handed alpha
Helix 3
AA3
A
93 109Right-handed alpha
Helix 4
AA4
A
125 137Right-handed alpha
Helix 5
AA5
A
150 154Right-handed 310
Helix 6
AA6
A
161 166Right-handed alpha
Helix 7
AA7
A
167 174Right-handed 310
Helix 8
AA8
A
175 186Right-handed alpha
Helix 9
AA9
A
193 214Right-handed alpha
Helix 10
AB1
A
217 222Right-handed alpha
Helix 11
AB2
A
247 259Right-handed alpha
Helix 12
AB3
A
270 282Right-handed alpha
Helix 13
AB4
A
282 303Right-handed alpha
Helix 14
AB5
A
304 323Right-handed alpha
Helix 15
AB6
A
326 344Right-handed alpha
Helix 16
AB7
A
359 367Right-handed alpha
Helix 17
AB8
A
368 373Right-handed alpha
Helix 18
AB9
A
375 379Right-handed 310
Helix 19
AC1
A
482 491Right-handed alpha
Helix 20
AC2
B
61 72Right-handed alpha
Helix 21
AC3
B
75 83Right-handed alpha
Helix 22
AC4
B
93 109Right-handed alpha
Helix 23
AC5
B
125 137Right-handed alpha
Helix 24
AC6
B
150 154Right-handed 310
Helix 25
AC7
B
161 166Right-handed alpha
Helix 26
AC8
B
167 174Right-handed 310
Helix 27
AC9
B
175 186Right-handed alpha
Helix 28
AD1
B
193 214Right-handed alpha
Helix 29
AD2
B
217 222Right-handed alpha
Helix 30
AD3
B
247 259Right-handed alpha
Helix 31
AD4
B
270 282Right-handed alpha
Helix 32
AD5
B
282 303Right-handed alpha
Helix 33
AD6
B
304 323Right-handed alpha
Helix 34
AD7
B
326 344Right-handed alpha
Helix 35
AD8
B
359 367Right-handed alpha
Helix 36
AD9
B
368 373Right-handed alpha
Helix 37
AE1
B
375 379Right-handed 310
Helix 38
AE2
B
482 491Right-handed alpha
Helix 39
AE3
C
61 72Right-handed alpha
Helix 40
AE4
C
75 83Right-handed alpha
Helix 41
AE5
C
93 109Right-handed alpha
Helix 42
AE6
C
125 137Right-handed alpha
Helix 43
AE7
C
150 154Right-handed 310
Helix 44
AE8
C
161 166Right-handed alpha
Helix 45
AE9
C
167 174Right-handed 310
Helix 46
AF1
C
175 186Right-handed alpha
Helix 47
AF2
C
193 214Right-handed alpha
Helix 48
AF3
C
217 222Right-handed alpha
Helix 49
AF4
C
247 259Right-handed alpha
Helix 50
AF5
C
270 282Right-handed alpha
Helix 51
AF6
C
282 303Right-handed alpha
Helix 52
AF7
C
304 323Right-handed alpha
Helix 53
AF8
C
326 344Right-handed alpha
Helix 54
AF9
C
359 367Right-handed alpha
Helix 55
AG1
C
368 373Right-handed alpha
Helix 56
AG2
C
375 379Right-handed 310
Helix 57
AG3
C
482 491Right-handed alpha
Helix 58
AG4
D
61 72Right-handed alpha
Helix 59
AG5
D
75 83Right-handed alpha
Helix 60
AG6
D
93 109Right-handed alpha
Helix 61
AG7
D
125 137Right-handed alpha
Helix 62
AG8
D
150 154Right-handed 310
Helix 63
AG9
D
161 166Right-handed alpha
Helix 64
AH1
D
167 174Right-handed 310
Helix 65
AH2
D
175 186Right-handed alpha
Helix 66
AH3
D
193 214Right-handed alpha
Helix 67
AH4
D
217 222Right-handed alpha
Helix 68
AH5
D
247 259Right-handed alpha
Helix 69
AH6
D
270 282Right-handed alpha
Helix 70
AH7
D
282 303Right-handed alpha
Helix 71
AH8
D
304 323Right-handed alpha
Helix 72
AH9
D
326 344Right-handed alpha
Helix 73
AI1
D
359 367Right-handed alpha
Helix 74
AI2
D
368 373Right-handed alpha
Helix 75
AI3
D
375 379Right-handed 310
Helix 76
AI4
D
482 491Right-handed alpha
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There are 4 sheets in PDB entry 7CAL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
432 434first strand
Strand 2
A
422 424anti-parallel
Strand 3
A
457 458anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
432 434first strand
Strand 2
B
422 424anti-parallel
Strand 3
B
457 458anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
432 434first strand
Strand 2
C
422 424anti-parallel
Strand 3
C
457 458anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
432 434first strand
Strand 2
D
422 424anti-parallel
Strand 3
D
457 458anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il