Analysis of interatomic Contacts of Structural Units in PDB entry:
7D9C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7D9C entry

There is 1 chain in PDB entry 7D9C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2ARG 589
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 7D9C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 7Right-handed 310
Helix 2
AA2
A
46 51Right-handed alpha
Helix 3
AA3
A
56 60Right-handed 310
Helix 4
AA4
A
110 114Right-handed 310
Helix 5
AA5
A
118 122Right-handed 310
Helix 6
AA6
A
129 133Right-handed 310
Helix 7
AA7
A
137 142Right-handed alpha
Helix 8
AA8
A
149 153Right-handed 310
Helix 9
AA9
A
157 161Right-handed 310
Helix 10
AB1
A
183 190Right-handed alpha
Helix 11
AB2
A
190 198Right-handed alpha
Helix 12
AB3
A
230 244Right-handed alpha
Helix 13
AB4
A
261 271Right-handed alpha
Helix 14
AB5
A
272 274Right-handed 310
Helix 15
AB6
A
276 280Right-handed 310
Helix 16
AB7
A
319 338Right-handed alpha
Helix 17
AB8
A
346 350Right-handed 310
Helix 18
AB9
A
351 366Right-handed alpha
Helix 19
AC1
A
379 383Right-handed 310
Helix 20
AC2
A
393 406Right-handed alpha
Helix 21
AC3
A
409 423Right-handed alpha
Helix 22
AC4
A
425 432Right-handed alpha
Helix 23
AC5
A
443 448Right-handed alpha
Helix 24
AC6
A
451 464Right-handed alpha
Helix 25
AC7
A
474 478Right-handed 310
Helix 26
AC8
A
494 498Right-handed 310
Helix 27
AC9
A
499 516Right-handed alpha
Helix 28
AD1
A
517 520Right-handed 310
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There are 7 sheets in PDB entry 7D9C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 20first strand
Strand 2
A
23 31anti-parallel
Strand 3
A
73 81anti-parallel
Strand 4
A
65 69anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 63first strand
Strand 2
A
35 43anti-parallel
Strand 3
A
87 95anti-parallel
Strand 4
A
100 104anti-parallel
Strand 5
A
107 109anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 63first strand
Strand 2
A
35 43anti-parallel
Strand 3
A
87 95anti-parallel
Strand 4
A
123 125anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
390 391first strand
Strand 2
A
370 373parallel
Strand 3
A
341 344parallel
Strand 4
A
247 252parallel
Strand 5
A
201 204parallel
Strand 6
A
145 148parallel
Strand 7
A
468 472parallel
Strand 8
A
433 434parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 209first strand
Strand 2
A
220 224anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
524 531first strand
Strand 2
A
534 540anti-parallel
Strand 3
A
544 551anti-parallel
Strand 4
A
581 587anti-parallel
Strand 5
A
564 568anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
557 558first strand
Strand 2
A
575 576anti-parallel
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