Analysis of interatomic Contacts of Structural Units in PDB entry:
7JGD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7JGD entry

There is 1 chain in PDB entry 7JGD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 28LYS 1949
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 7JGD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
99 105Right-handed 310
Helix 2
AA2
A
120 143Right-handed alpha
Helix 3
AA3
A
152 165Right-handed alpha
Helix 4
AA4
A
176 191Right-handed alpha
Helix 5
AA5
A
208 223Right-handed alpha
Helix 6
AA6
A
224 229Right-handed 310
Helix 7
AA7
A
274 306Right-handed alpha
Helix 8
AA8
A
318 355Right-handed alpha
Helix 9
AA9
A
364 379Right-handed alpha
Helix 10
AB1
A
581 586Right-handed alpha
Helix 11
AB2
A
618 636Right-handed alpha
Helix 12
AB3
A
642 661Right-handed alpha
Helix 13
AB4
A
670 686Right-handed alpha
Helix 14
AB5
A
703 723Right-handed alpha
Helix 15
AB6
A
757 785Right-handed alpha
Helix 16
AB7
A
803 815Right-handed alpha
Helix 17
AB8
A
830 852Right-handed alpha
Helix 18
AB9
A
881 893Right-handed alpha
Helix 19
AC1
A
896 905Right-handed alpha
Helix 20
AC2
A
970 978Right-handed alpha
Helix 21
AC3
A
1028 1052Right-handed alpha
Helix 22
AC4
A
1093 1128Right-handed alpha
Helix 23
AC5
A
1140 1158Right-handed alpha
Helix 24
AC6
A
1169 1180Right-handed alpha
Helix 25
AC7
A
1186 1206Right-handed alpha
Helix 26
AC8
A
1266 1271Right-handed alpha
Helix 27
AC9
A
1296 1318Right-handed alpha
Helix 28
AD1
A
1342 1360Right-handed alpha
Helix 29
AD2
A
1366 1380Right-handed alpha
Helix 30
AD3
A
1403 1428Right-handed alpha
Helix 31
AD4
A
1449 1476Right-handed alpha
Helix 32
AD5
A
1500 1530Right-handed alpha
Helix 33
AD6
A
1534 1542Right-handed alpha
Helix 34
AD7
A
1550 1555Right-handed alpha
Helix 35
AD8
A
1570 1575Right-handed alpha
Helix 36
AD9
A
1627 1631Right-handed 310
Helix 37
AE1
A
1635 1643Right-handed alpha
Helix 38
AE2
A
1646 1674Right-handed alpha
Helix 39
AE3
A
1675 1678Right-handed 310
Helix 40
AE4
A
1680 1704Right-handed alpha
Helix 41
AE5
A
1710 1724Right-handed alpha
Helix 42
AE6
A
1730 1744Right-handed alpha
Helix 43
AE7
A
1755 1774Right-handed alpha
Helix 44
AE8
A
1793 1821Right-handed alpha
Helix 45
AE9
A
1837 1866Right-handed alpha
Helix 46
AF1
A
1887 1892Right-handed alpha
Helix 47
AF2
A
1915 1920Right-handed alpha
Helix 48
AF3
A
1930 1949Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 7JGD.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
920 923first strand
Strand 2
A
947 950anti-parallel
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