Analysis of interatomic Contacts of Structural Units in PDB entry:
7JUZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7JUZ entry

There are 2 chains in PDB entry 7JUZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 601PRO 881
C
 LEU 40ASN 382
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 30 helices in PDB entry 7JUZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
647 663Right-handed alpha
Helix 2
AA2
A
694 699Right-handed alpha
Helix 3
AA3
A
706 727Right-handed alpha
Helix 4
AA4
A
735 737Right-handed 310
Helix 5
AA5
A
752 756Right-handed 310
Helix 6
AA6
A
772 779Right-handed alpha
Helix 7
AA7
A
780 787Right-handed alpha
Helix 8
AA8
A
792 796Right-handed 310
Helix 9
AA9
A
799 817Right-handed alpha
Helix 10
AB1
A
825 835Right-handed alpha
Helix 11
AB2
A
836 846Right-handed alpha
Helix 12
AB3
A
849 860Right-handed alpha
Helix 13
AB4
A
863 867Right-handed 310
Helix 14
AB5
A
869 879Right-handed alpha
Helix 15
AB6
C
43 61Right-handed alpha
Helix 16
AB7
C
104 116Right-handed alpha
Helix 17
AB8
C
117 120Right-handed 310
Helix 18
AB9
C
151 159Right-handed alpha
Helix 19
AC1
C
162 184Right-handed alpha
Helix 20
AC2
C
192 194Right-handed 310
Helix 21
AC3
C
212 219Right-handed alpha
Helix 22
AC4
C
220 223Right-handed 310
Helix 23
AC5
C
231 236Right-handed alpha
Helix 24
AC6
C
241 259Right-handed alpha
Helix 25
AC7
C
267 274Right-handed alpha
Helix 26
AC8
C
309 320Right-handed alpha
Helix 27
AC9
C
331 342Right-handed alpha
Helix 28
AD1
C
351 357Right-handed alpha
Helix 29
AD2
C
358 367Right-handed alpha
Helix 30
AD3
C
370 380Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 7JUZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
614 621first strand
Strand 2
A
626 631anti-parallel
Strand 3
A
635 642anti-parallel
Strand 4
A
681 687anti-parallel
Strand 5
A
672 678anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
692 693first strand
Strand 2
A
739 742anti-parallel
Strand 3
A
745 748anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
68 75first strand
Strand 2
C
82 87anti-parallel
Strand 3
C
93 100anti-parallel
Strand 4
C
138 143anti-parallel
Strand 5
C
129 133anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
149 150first strand
Strand 2
C
196 198anti-parallel
Strand 3
C
204 206anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il