Analysis of interatomic Contacts of Structural Units in PDB entry:
7K60

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7K60 entry

There are 13 chains in PDB entry 7K60 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 37	GLU 133
B	LYS 20	GLY 102
C	ALA 10	LYS 118
D	LYS 30	ALA 124
E	LYS 37	GLU 133
F	LYS 20	GLY 102
G	ALA 10	LYS 118
H	LYS 30	ALA 124
I	G 1	C 197
J	G 1	C 197
M	MET 19	SER 268
N	MET 19	SER 268
U	GLN 43	LYS 118

There are 47 helices in PDB entry 7K60. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	44	57	Right-handed alpha
Helix 2	AA2	A	63	76	Right-handed alpha
Helix 3	AA3	A	85	114	Right-handed alpha
Helix 4	AA4	A	120	132	Right-handed alpha
Helix 5	AA5	B	24	29	Right-handed 310
Helix 6	AA6	B	30	41	Right-handed alpha
Helix 7	AA7	B	49	76	Right-handed alpha
Helix 8	AA8	B	82	93	Right-handed alpha
Helix 9	AA9	C	16	22	Right-handed alpha
Helix 10	AB1	C	26	37	Right-handed alpha
Helix 11	AB2	C	45	73	Right-handed alpha
Helix 12	AB3	C	79	89	Right-handed alpha
Helix 13	AB4	C	90	97	Right-handed alpha
Helix 14	AB5	C	112	116	Right-handed 310
Helix 15	AB6	D	37	49	Right-handed alpha
Helix 16	AB7	D	55	84	Right-handed alpha
Helix 17	AB8	D	90	102	Right-handed alpha
Helix 18	AB9	D	103	124	Right-handed alpha
Helix 19	AC1	E	45	57	Right-handed alpha
Helix 20	AC2	E	63	76	Right-handed alpha
Helix 21	AC3	E	85	114	Right-handed alpha
Helix 22	AC4	E	120	132	Right-handed alpha
Helix 23	AC5	F	24	29	Right-handed 310
Helix 24	AC6	F	30	41	Right-handed alpha
Helix 25	AC7	F	49	76	Right-handed alpha
Helix 26	AC8	F	82	93	Right-handed alpha
Helix 27	AC9	G	16	22	Right-handed alpha
Helix 28	AD1	G	26	37	Right-handed alpha
Helix 29	AD2	G	45	74	Right-handed alpha
Helix 30	AD3	G	79	89	Right-handed alpha
Helix 31	AD4	G	90	97	Right-handed alpha
Helix 32	AD5	G	112	116	Right-handed 310
Helix 33	AD6	H	37	49	Right-handed alpha
Helix 34	AD7	H	55	84	Right-handed alpha
Helix 35	AD8	H	90	102	Right-handed alpha
Helix 36	AD9	H	104	124	Right-handed alpha
Helix 37	AE1	M	98	102	Right-handed 310
Helix 38	AE2	M	177	179	Right-handed 310
Helix 39	AE3	M	211	214	Right-handed 310
Helix 40	AE4	M	236	240	Right-handed 310
Helix 41	AE5	N	98	102	Right-handed 310
Helix 42	AE6	N	177	179	Right-handed 310
Helix 43	AE7	N	211	214	Right-handed 310
Helix 44	AE8	N	236	240	Right-handed 310
Helix 45	AE9	U	45	59	Right-handed alpha
Helix 46	AF1	U	66	74	Right-handed alpha
Helix 47	AF2	U	83	98	Right-handed alpha

There are 23 sheets in PDB entry 7K60. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	B	80	81	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	119	first strand
Strand 2	B	45	46	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	98	first strand
Strand 2	G	101	102	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	43	first strand
Strand 2	D	88	89	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	78	first strand
Strand 2	D	53	54	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	102	first strand
Strand 2	F	97	98	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	84	first strand
Strand 2	F	80	81	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	119	first strand
Strand 2	F	45	46	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	43	first strand
Strand 2	H	88	89	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	77	78	first strand
Strand 2	H	53	54	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	23	25	first strand
Strand 2	M	38	44	anti-parallel
Strand 3	M	89	94	anti-parallel
Strand 4	M	81	86	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	29	32	first strand
Strand 2	M	121	125	parallel
Strand 3	M	103	109	anti-parallel
Strand 4	M	52	57	anti-parallel
Strand 5	M	64	68	anti-parallel
Strand 6	M	72	73	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	29	32	first strand
Strand 2	M	121	125	parallel
Strand 3	M	103	109	anti-parallel
Strand 4	M	116	117	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	152	155	first strand
Strand 2	M	167	174	anti-parallel
Strand 3	M	227	232	anti-parallel
Strand 4	M	217	222	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	159	161	first strand
Strand 2	M	263	267	parallel
Strand 3	M	241	249	anti-parallel
Strand 4	M	181	189	anti-parallel
Strand 5	M	193	201	anti-parallel
Strand 6	M	206	209	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	159	161	first strand
Strand 2	M	263	267	parallel
Strand 3	M	241	249	anti-parallel
Strand 4	M	258	259	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	23	24	first strand
Strand 2	N	38	44	anti-parallel
Strand 3	N	89	94	anti-parallel
Strand 4	N	81	86	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	29	32	first strand
Strand 2	N	121	125	parallel
Strand 3	N	104	109	anti-parallel
Strand 4	N	52	57	anti-parallel
Strand 5	N	64	68	anti-parallel
Strand 6	N	72	73	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	29	32	first strand
Strand 2	N	121	125	parallel
Strand 3	N	104	109	anti-parallel
Strand 4	N	116	117	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	152	155	first strand
Strand 2	N	166	174	anti-parallel
Strand 3	N	227	233	anti-parallel
Strand 4	N	217	222	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	159	161	first strand
Strand 2	N	263	267	parallel
Strand 3	N	241	249	anti-parallel
Strand 4	N	181	189	anti-parallel
Strand 5	N	193	201	anti-parallel
Strand 6	N	206	209	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	159	161	first strand
Strand 2	N	263	267	parallel
Strand 3	N	241	249	anti-parallel
Strand 4	N	258	259	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	64	65	first strand
Strand 2	U	112	115	anti-parallel
Strand 3	U	101	105	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7K60

Analysis of interatomic Contacts of Structural Units in PDB entry:
7K60