Analysis of interatomic Contacts of Structural Units in PDB entry:
7KHI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7KHI entry

There are 9 chains in PDB entry 7KHI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLU 7ASP 236
B
THR 6ASP 233
C
VAL 2GLU 1342
D
THR 14GLY 1376
E
ALA 2ALA 77
F
GLN 6ASP 612
X
T 20 G 55
Y
A 34 A 61
M
SER 10GLY 151
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are140 helices in PDB entry 7KHI. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
34 51Right-handed alpha
Helix 2
AA2
A
77 87Right-handed alpha
Helix 3
AA3
A
113 115Right-handed 310
Helix 4
AA4
A
156 162Right-handed 310
Helix 5
AA5
A
212 233Right-handed alpha
Helix 6
AA6
B
34 50Right-handed alpha
Helix 7
AA7
B
77 87Right-handed alpha
Helix 8
AA8
B
113 115Right-handed 310
Helix 9
AA9
B
154 161Right-handed alpha
Helix 10
AB1
B
212 229Right-handed alpha
Helix 11
AB2
C
4 10Right-handed alpha
Helix 12
AB3
C
28 39Right-handed alpha
Helix 13
AB4
C
49 57Right-handed alpha
Helix 14
AB5
C
81 89Right-handed alpha
Helix 15
AB6
C
206 213Right-handed alpha
Helix 16
AB7
C
216 225Right-handed alpha
Helix 17
AB8
C
242 247Right-handed 310
Helix 18
AB9
C
270 280Right-handed alpha
Helix 19
AC1
C
288 294Right-handed alpha
Helix 20
AC2
C
318 329Right-handed alpha
Helix 21
AC3
C
345 354Right-handed alpha
Helix 22
AC4
C
362 371Right-handed alpha
Helix 23
AC5
C
377 390Right-handed alpha
Helix 24
AC6
C
398 409Right-handed alpha
Helix 25
AC7
C
421 438Right-handed alpha
Helix 26
AC8
C
447 449Right-handed 310
Helix 27
AC9
C
455 482Right-handed alpha
Helix 28
AD1
C
495 508Right-handed alpha
Helix 29
AD2
C
519 528Right-handed alpha
Helix 30
AD3
C
544 549Right-handed alpha
Helix 31
AD4
C
551 555Right-handed 310
Helix 32
AD5
C
608 612Right-handed alpha
Helix 33
AD6
C
648 650Right-handed 310
Helix 34
AD7
C
656 661Right-handed 310
Helix 35
AD8
C
662 668Right-handed alpha
Helix 36
AD9
C
670 674Right-handed 310
Helix 37
AE1
C
675 687Right-handed alpha
Helix 38
AE2
C
704 712Right-handed alpha
Helix 39
AE3
C
820 825Right-handed alpha
Helix 40
AE4
C
858 863Right-handed alpha
Helix 41
AE5
C
896 907Right-handed alpha
Helix 42
AE6
C
942 981Right-handed alpha
Helix 43
AE7
C
986 992Right-handed alpha
Helix 44
AE8
C
1005 1038Right-handed alpha
Helix 45
AE9
C
1101 1106Right-handed alpha
Helix 46
AF1
C
1109 1134Right-handed alpha
Helix 47
AF2
C
1137 1151Right-handed alpha
Helix 48
AF3
C
1166 1177Right-handed alpha
Helix 49
AF4
C
1191 1202Right-handed alpha
Helix 50
AF5
C
1238 1243Right-handed alpha
Helix 51
AF6
C
1271 1281Right-handed alpha
Helix 52
AF7
C
1283 1292Right-handed alpha
Helix 53
AF8
C
1297 1311Right-handed alpha
Helix 54
AF9
C
1320 1333Right-handed alpha
Helix 55
AG1
D
26 34Right-handed alpha
Helix 56
AG2
D
94 100Right-handed 310
Helix 57
AG3
D
114 119Right-handed alpha
Helix 58
AG4
D
122 129Right-handed alpha
Helix 59
AG5
D
131 140Right-handed alpha
Helix 60
AG6
D
162 172Right-handed alpha
Helix 61
AG7
D
180 192Right-handed alpha
Helix 62
AG8
D
193 208Right-handed alpha
Helix 63
AG9
D
210 231Right-handed alpha
Helix 64
AH1
D
233 236Right-handed 310
Helix 65
AH2
D
246 250Right-handed 310
Helix 66
AH3
D
255 259Right-handed 310
Helix 67
AH4
D
263 285Right-handed alpha
Helix 68
AH5
D
288 308Right-handed alpha
Helix 69
AH6
D
326 332Right-handed alpha
Helix 70
AH7
D
370 377Right-handed alpha
Helix 71
AH8
D
377 388Right-handed alpha
Helix 72
AH9
D
393 404Right-handed alpha
Helix 73
AI1
D
405 417Right-handed alpha
Helix 74
AI2
D
430 432Right-handed 310
Helix 75
AI3
D
453 458Right-handed alpha
Helix 76
AI4
D
473 483Right-handed alpha
Helix 77
AI5
D
485 489Right-handed 310
Helix 78
AI6
D
504 515Right-handed alpha
Helix 79
AI7
D
529 539Right-handed alpha
Helix 80
AI8
D
574 581Right-handed alpha
Helix 81
AI9
D
589 594Right-handed alpha
Helix 82
AJ1
D
597 612Right-handed alpha
Helix 83
AJ2
D
613 636Right-handed alpha
Helix 84
AJ3
D
640 644Right-handed 310
Helix 85
AJ4
D
649 670Right-handed alpha
Helix 86
AJ5
D
674 703Right-handed alpha
Helix 87
AJ6
D
720 728Right-handed alpha
Helix 88
AJ7
D
733 742Right-handed alpha
Helix 89
AJ8
D
768 805Right-handed alpha
Helix 90
AJ9
D
834 840Right-handed alpha
Helix 91
AK1
D
865 875Right-handed alpha
Helix 92
AK2
D
896 900Right-handed alpha
Helix 93
AK3
D
914 925Right-handed alpha
Helix 94
AK4
D
1137 1146Right-handed alpha
Helix 95
AK5
D
1216 1225Right-handed alpha
Helix 96
AK6
D
1225 1244Right-handed alpha
Helix 97
AK7
D
1249 1261Right-handed alpha
Helix 98
AK8
D
1280 1293Right-handed alpha
Helix 99
AK9
D
1308 1315Right-handed alpha
Helix 100
AL1
D
1318 1326Right-handed alpha
Helix 101
AL2
D
1327 1339Right-handed alpha
Helix 102
AL3
D
1346 1354Right-handed alpha
Helix 103
AL4
D
1359 1361Right-handed 310
Helix 104
AL5
D
1362 1373Right-handed alpha
Helix 105
AL6
E
6 13Right-handed alpha
Helix 106
AL7
E
17 32Right-handed alpha
Helix 107
AL8
E
45 56Right-handed alpha
Helix 108
AL9
E
60 77Right-handed alpha
Helix 109
AM1
F
9 19Right-handed alpha
Helix 110
AM2
F
23 30Right-handed alpha
Helix 111
AM3
F
40 50Right-handed alpha
Helix 112
AM4
F
65 72Right-handed alpha
Helix 113
AM5
F
77 88Right-handed alpha
Helix 114
AM6
F
96 108Right-handed alpha
Helix 115
AM7
F
112 135Right-handed alpha
Helix 116
AM8
F
139 153Right-handed alpha
Helix 117
AM9
F
214 234Right-handed alpha
Helix 118
AN1
F
244 257Right-handed alpha
Helix 119
AN2
F
262 295Right-handed alpha
Helix 120
AN3
F
298 307Right-handed alpha
Helix 121
AN4
F
313 322Right-handed alpha
Helix 122
AN5
F
324 330Right-handed alpha
Helix 123
AN6
F
333 352Right-handed alpha
Helix 124
AN7
F
356 392Right-handed alpha
Helix 125
AN8
F
393 395Right-handed 310
Helix 126
AN9
F
400 419Right-handed alpha
Helix 127
AO1
F
426 448Right-handed alpha
Helix 128
AO2
F
453 473Right-handed alpha
Helix 129
AO3
F
479 487Right-handed alpha
Helix 130
AO4
F
491 501Right-handed alpha
Helix 131
AO5
F
530 551Right-handed alpha
Helix 132
AO6
F
552 563Right-handed alpha
Helix 133
AO7
F
572 581Right-handed alpha
Helix 134
AO8
F
584 600Right-handed alpha
Helix 135
AO9
F
604 611Right-handed alpha
Helix 136
AP1
M
33 66Right-handed alpha
Helix 137
AP2
M
71 79Right-handed alpha
Helix 138
AP3
M
80 109Right-handed alpha
Helix 139
AP4
M
122 129Right-handed alpha
Helix 140
AP5
M
135 151Right-handed alpha
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There are 47 sheets in PDB entry 7KHI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
13 18first strand
Strand 2
A
23 32anti-parallel
Strand 3
A
198 207anti-parallel
Strand 4
A
180 189anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
98 105first strand
Strand 2
A
139 149anti-parallel
Strand 3
A
53 61anti-parallel
Strand 4
A
171 172anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
90 92first strand
Strand 2
A
121 123anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
108 111first strand
Strand 2
A
129 133anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
151 153first strand
Strand 2
A
175 177anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
12 17first strand
Strand 2
B
23 31anti-parallel
Strand 3
B
195 207anti-parallel
Strand 4
B
180 192anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
97 105first strand
Strand 2
B
139 150anti-parallel
Strand 3
B
52 61anti-parallel
Strand 4
B
170 172anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
90 92first strand
Strand 2
B
121 123anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
108 111first strand
Strand 2
B
129 133anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
152 153first strand
Strand 2
B
175 176anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
13 14first strand
Strand 2
C
1182 1183parallel
Strand 3
C
700 701parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
66 75first strand
Strand 2
C
93 105anti-parallel
Strand 3
C
113 118anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
66 75first strand
Strand 2
C
93 105anti-parallel
Strand 3
C
122 128anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
136 137first strand
Strand 2
C
142 145anti-parallel
Strand 3
C
512 514anti-parallel
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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
451 454first strand
Strand 2
C
147 151anti-parallel
Strand 3
C
530 531parallel
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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
154 158first strand
Strand 2
C
173 177anti-parallel
Strand 3
C
184 187anti-parallel
Strand 4
C
195 198anti-parallel
Strand 5
C
203 205anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
285 286first strand
Strand 2
C
236 239anti-parallel
Strand 3
C
227 233anti-parallel
Strand 4
C
333 336anti-parallel
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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
255 257first strand
Strand 2
C
260 263anti-parallel
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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
301 302first strand
Strand 2
C
309 311anti-parallel
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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
580 581first strand
Strand 2
C
587 593anti-parallel
Strand 3
C
603 607anti-parallel
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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
580 581first strand
Strand 2
C
587 593anti-parallel
Strand 3
C
652 654anti-parallel
Strand 4
C
616 617parallel
Strand 5
C
633 637anti-parallel
Strand 6
C
642 646anti-parallel
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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
623 624first strand
Strand 2
C
628 629anti-parallel
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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
716 717first strand
Strand 2
C
782 785anti-parallel
Strand 3
C
768 769anti-parallel
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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
749 752first strand
Strand 2
C
731 736anti-parallel
Strand 3
C
722 727anti-parallel
Strand 4
C
776 777anti-parallel
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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
757 758first strand
Strand 2
C
764 765anti-parallel
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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
789 790first strand
Strand 2
C
793 794anti-parallel
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There are 8 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
1209 1210first strand
Strand 2
C
1225 1234anti-parallel
Strand 3
C
1065 1068anti-parallel
Strand 4
C
1073 1080anti-parallel
Strand 5
C
816 819parallel
Strand 6
C
1096 1098anti-parallel
Strand 7
C
798 804parallel
Strand 8
C
1225 1234anti-parallel
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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
846 847first strand
Strand 2
C
830 843anti-parallel
Strand 3
C
1046 1058anti-parallel
Strand 4
C
926 935anti-parallel
Strand 5
C
876 877anti-parallel
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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
882 884first strand
Strand 2
C
918 919anti-parallel
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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
887 889first strand
Strand 2
C
913 915anti-parallel
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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
1087 1088first strand
Strand 2
C
1212 1213anti-parallel
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There are 8 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
1244 1246first strand
Strand 2
D
350 356anti-parallel
Strand 3
D
465 469anti-parallel
Strand 4
D
421 424anti-parallel
Strand 5
D
434 442anti-parallel
Strand 6
D
365 369parallel
Strand 7
D
447 449anti-parallel
Strand 8
D
350 356parallel
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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
1335 1339first strand
Strand 2
D
20 24anti-parallel
Strand 3
D
1341 1342anti-parallel
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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
103 112first strand
Strand 2
D
238 244anti-parallel
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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
159 161first strand
Strand 2
D
143 146anti-parallel
Strand 3
D
178 179anti-parallel
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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
261 262first strand
Strand 2
F
505 506parallel
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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
526 527first strand
Strand 2
D
547 557parallel
Strand 3
D
563 573anti-parallel
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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
809 811first strand
Strand 2
D
894 895parallel
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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
820 822first strand
Strand 2
D
880 882anti-parallel
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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
848 849first strand
Strand 2
D
856 858anti-parallel
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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
935 936first strand
Strand 2
D
1135 1136anti-parallel
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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
991 996first strand
Strand 2
D
981 985anti-parallel
Strand 3
D
956 961anti-parallel
Strand 4
D
1010 1011anti-parallel
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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
965 967first strand
Strand 2
D
973 975anti-parallel
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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
1002 1003first strand
Strand 2
D
1018 1019anti-parallel
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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
1035 1038first strand
Strand 2
D
1077 1080anti-parallel
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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
1186 1191first strand
Strand 2
D
1172 1177anti-parallel
Strand 3
D
1161 1165anti-parallel
Strand 4
D
1203 1204anti-parallel
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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
1277 1279first strand
Strand 2
D
1263 1266anti-parallel
Strand 3
D
1302 1304anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il