Analysis of interatomic Contacts of Structural Units in PDB entry:
8GSS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GSS entry

There are 3 chains in PDB entry 8GSS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
PRO 1GLN 209
B
PRO 1GLN 209
C
PRO 1GLN 209
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 8GSS. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
12 23Right-handed 310
Helix 2
2
A
35 40Right-handed alpha
Helix 3
3
A
42 46Right-handed alpha
Helix 4
4
A
65 76Right-handed alpha
Helix 5
5
A
83 109Right-handed alpha
Helix 6
6
A
111 135Right-handed alpha
Helix 7
7
A
150 165Right-handed alpha
Helix 8
8
A
174 185Right-handed alpha
Helix 9
9
A
187 194Right-handed alpha
Helix 10
10
A
196 199Right-handed alpha
Helix 11
11
B
12 23Right-handed 310
Helix 12
12
B
35 40Right-handed alpha
Helix 13
13
B
42 46Right-handed alpha
Helix 14
14
B
65 75Right-handed alpha
Helix 15
15
B
83 109Right-handed alpha
Helix 16
16
B
111 135Right-handed alpha
Helix 17
17
B
137 139Right-handed 310
Helix 18
18
B
150 165Right-handed alpha
Helix 19
19
B
174 185Right-handed alpha
Helix 20
20
B
187 194Right-handed alpha
Helix 21
21
B
196 199Right-handed alpha
Helix 22
22
C
12 23Right-handed 310
Helix 23
23
C
35 40Right-handed alpha
Helix 24
24
C
42 46Right-handed alpha
Helix 25
25
C
65 76Right-handed alpha
Helix 26
26
C
83 109Right-handed alpha
Helix 27
27
C
111 135Right-handed alpha
Helix 28
28
C
150 165Right-handed alpha
Helix 29
29
C
174 185Right-handed alpha
Helix 30
30
C
187 194Right-handed alpha
Helix 31
31
C
196 199Right-handed alpha
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There are 3 sheets in PDB entry 8GSS. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
29 33first strand
Strand 2
A
3 8parallel
Strand 3
A
54 57anti-parallel
Strand 4
A
60 63anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
28 33first strand
Strand 2
B
3 8parallel
Strand 3
B
54 57anti-parallel
Strand 4
B
60 63anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
28 33first strand
Strand 2
C
3 8parallel
Strand 3
C
54 57anti-parallel
Strand 4
C
60 63anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il