Analysis of interatomic Contacts of Structural Units in PDB entry:
8LDH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8LDH entry

There is 1 chain in PDB entry 8LDH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1PHE 329
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 8LDH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
A
A
3 6Right-handed alpha
Helix 2
B
A
30 40Right-handed alpha
Helix 3
C
A
56 66Right-handed alpha
Helix 4
D
A
107 120Right-handed alpha
Helix 5
E
A
121 129Right-handed alpha
Helix 6
1F
A
140 150Right-handed alpha
Helix 7
2F
A
164 177Right-handed alpha
Helix 8
1G
A
225 232Right-handed alpha
Helix 9
2G
A
232 242Right-handed alpha
Helix 10
3G
A
247 261Right-handed alpha
Helix 11
H
A
307 323Right-handed alpha
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There are 4 sheets in PDB entry 8LDH. Click on sheet of interest to get list of strands forming it: S1, S2A, S2B, S3,

There are 6 strands in S1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 80first strand
Strand 2
A
46 51parallel
Strand 3
A
21 27parallel
Strand 4
A
90 95parallel
Strand 5
A
132 135parallel
Strand 6
A
157 159parallel
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There are 3 strands in S2A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 192first strand
Strand 2
A
204 206anti-parallel
Strand 3
A
209 211anti-parallel
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There are 2 strands in S2B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 192first strand
Strand 2
A
197 200anti-parallel
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There are 3 strands in S3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 274first strand
Strand 2
A
284 292anti-parallel
Strand 3
A
299 301anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il