Analysis of Ligand-Protein Contacts in PDB entry:
1CDK


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and by LPC/CSU analysis.


There are 10 ligands in PDB entry 1CDK. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
TPO
A
197 11PHOSPHOTHREONINE
lig 2
TPO
B
197 11PHOSPHOTHREONINE
lig 3
MN
A
401 1MANGANESE (II) ION
lig 4
MN
A
402 1MANGANESE (II) ION
lig 5
ANP
A
400 31PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTE
lig 6
MYR
A
403 6MYRISTIC ACID
lig 7
MN
B
401 1MANGANESE (II) ION
lig 8
MN
B
402 1MANGANESE (II) ION
lig 9
ANP
B
400 31PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTE
lig 10
MYR
B
403 6MYRISTIC ACID